Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152833g00001 ATGTCATCATCACAACCACCACTACGGTGGCCTCATCAAGAAGCAGAAGATAATAATGAAGAAGAAGATGAAATGAATAAGGAGCTCATGTTCGAGAAGGTTCTTACTCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTCATTCCTAAATCACACGCCGAGGCGCATTTCCCCCTCGGCGCCGACGGATACTCCGCCGAGGGAAAAGGCCTCCTTCTCAACTTCGACGACCACTCCGGAAAACGCTGGAGGTTCCGATACTCCTACTGGAGCAGCAGCCAGAGCTACGTTCTCACCAAAGGATGGAGCCGTTACGTTAAGGAAAACCACCTTGCTGCCGGCGACGTCGTTTTGTTCAAGAGGCACCGTCTCCATCCAAATAGTTTTTTTGTCAGTTGGAGGCGCCGTCATCCTGGGACCGTGGCCTCTGCAAGAGGGAGGAGGAAGAGGGCTGATGAGGGTGCCAGTGTTGGTGATGGTGATGGTGACGATAGCACCGGGTGCTATCCTGCGCTTTCTTATCCTACGCACCACCAGCAACATCCAATGTCGTCACCGTATGATTCTGAATATTTTCTTCATGCAGGTGAAGGTACAAACGAAACGACAATGGTGGAAAACCCTTTGAGTTCAGGTTCGAGGATGCTGAGGCTGTTCGGGGTGAACATGGAATGCCAAAACCAACAAGAAGAAACACATAATACTAATTATTATAATGTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATTCTGAAACCTTCTCATCAACCCGGACTCATGTCCCCAATTAA 813 0.4711 MSSSQPPLRWPHQEAEDNNEEEDEMNKELMFEKVLTPSDVGKLNRLVIPKSHAEAHFPLGADGYSAEGKGLLLNFDDHSGKRWRFRYSYWSSSQSYVLTKGWSRYVKENHLAAGDVVLFKRHRLHPNSFFVSWRRRHPGTVASARGRRKRADEGASVGDGDGDDSTGCYPALSYPTHHQQHPMSSPYDSEYFLHAGEGTNETTMVENPLSSGSRMLRLFGVNMECQNQQEETHNTNYYNVNNNNNNNNNNNNNNNNDSETFSSTRTHVPN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152833g00001 270 MobiDBLite consensus disorder prediction 141 184 - -
Stsc152833g00001 270 Gene3D - 19 143 IPR015300 -
Stsc152833g00001 270 Pfam B3 DNA binding domain 31 136 IPR003340 GO:0003677
Stsc152833g00001 270 MobiDBLite consensus disorder prediction 239 270 - -
Stsc152833g00001 270 CDD B3_DNA 30 135 IPR003340 GO:0003677
Stsc152833g00001 270 SMART B3_2 31 137 IPR003340 GO:0003677
Stsc152833g00001 270 SUPERFAMILY DNA-binding pseudobarrel domain 28 135 IPR015300 -
Stsc152833g00001 270 MobiDBLite consensus disorder prediction 1 25 - -
Stsc152833g00001 270 Coils Coil 12 32 - -
Stsc152833g00001 270 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 243 IPR044800 GO:0003700
Stsc152833g00001 270 ProSiteProfiles B3 DNA-binding domain profile. 31 137 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152833g00001 Stsc-Chr152833 3099 5541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152833g00001 27 226 RAV Transcription Factor Family AT5G06250 49.065 6.01e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152833g00001 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152833g00001 K09287 - ahf:112758698 326.635