Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152794g00002 ATGGCCGTTAGGGGCGTCAATTTCAAGTGGTACGATGGGTTCTTCCTCGCCATGCTTGCCACCAGCGTAGTTGTTGTGGCAATTAGTTGGAAGCGCTACCAATCTTGTAGCTACCCTTTGCATCTATGGATTATGGTTGATTACACTGCTGTGTTTATTTTCCGGCTTTTGATGTTTGTTGACAATGGGCTTGCTTCTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGATTGTCCTTTCAATCCTTGCATTGCTTCTTTATCCATTTCTTTGGGTTTGGACTATAATTGGTTCTCTGTGGTTCATCAGTTCCAAGACTTGTTTGAATGGAGATGGTAAAAGATATGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCATTTGTATTGCTTGCATGTCAATGGGGAAGTGGTTGACACGGAGACAAGCACATCTATTACGGGCCCAACAGGGTATTCCTATATCTGAATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGAACCAAGATGCTGCTGCATATCATCCTGGACTTTACCTAACTCCGGCTCAGAGAGAAGCAGTTAAAGCTTTAATTCAGGAACTCCCAAGGTTCAGCCTGAAGGCTGTTCCAACTGATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCGTGAAGGCAATGAGGTCCGTGGTCTACCTTGTGCTCACAATTTTCATGTTGAATGCATTGACGAATGGCTTCAGCTGAATGTGAAATGTCCTCAGTGTCGTTGCTCAGTTTTTCCGAATCTTGATCTTAGTGCTCTGTCCAATATCCGTACTGAATTTCAGCAGACTTCTGAGAGTACTGTTGGGACATCAACCAGATATGTGCAACTGCAACCTTCTAGCCAGAGTTACCTGTTGAGATTACAAGGGCTTGTCCACCCAGTGCATGCTGAAATTGCAGGGCCAAATGGAGAGACAGACAATGCCTTAGAAAATGCCGAAAATGGTGTTTTACCTGTTACAACCAGAAATATGTCTAACCGGTGA 1092 0.4441 MAVRGVNFKWYDGFFLAMLATSVVVVAISWKRYQSCSYPLHLWIMVDYTAVFIFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVIVLSILALLLYPFLWVWTIIGSLWFISSKTCLNGDGKRYGFLIWLLFSYCGLICIACMSMGKWLTRRQAHLLRAQQGIPISEYGVLVEMIRVPDWAFEAAGQESRGMNQDAAAYHPGLYLTPAQREAVKALIQELPRFSLKAVPTDCSECLICLEEFREGNEVRGLPCAHNFHVECIDEWLQLNVKCPQCRCSVFPNLDLSALSNIRTEFQQTSESTVGTSTRYVQLQPSSQSYLLRLQGLVHPVHAEIAGPNGETDNALENAENGVLPVTTRNMSNR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152794g00002 363 Pfam Ring finger domain 234 276 IPR001841 -
Stsc152794g00002 363 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Stsc152794g00002 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842|GO:0010182
Stsc152794g00002 363 SMART ring_2 235 275 IPR001841 -
Stsc152794g00002 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Stsc152794g00002 363 SUPERFAMILY RING/U-box 216 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152794g00002 Stsc-Chr152794 1822 6772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152794g00002 58 361 C3H Transcription Factor Family AT3G47990 70.261 9.71e-156 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152794g00002 K16284 - gmx:100812016 626.32