Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152785g00001 ATGGCTGTAGAGCACTCATTAAAGCTAAAGCTTCCGCTGCTGCTTCTTATTGTTATTGCAGCTATCGATTCTTATTGTGCAGCAGCACGTGAAGTAGCGGCGGGTATCCAAGTAATCCCTAAAAAATGCAAACGTAGATGCGGCCACGTCAGCATTGAGTACCCGTTTGGGACCACAAAGGAGTGTTCTCTCGACACCGAATTCCTCATCGACTGCACCAACAATGGCCCATACTTGTCCAATCTATTGCCATACAACGACAATCCCATACAAGTGCTAAGCCTATCTGTGGACGCTGCCGAACTCCGCGTTTCCTTGCCGGTAGCCAGTGATTGCTACTACACCAACAGCAGCAGCAAGAAGGGCCATTTCTTCAACAATGAAACCGATCAGTTCATGTTTTTGGGAAATTATAGCATCTCAACGAGCAGAAACATGTTCACAACGGTTGGTTGTCAAACACTTGGATTAGTGGTGGGGAGAAGTTATTATTCCGTGGAAGATGATGAGATCATCAGTACGCAAGCGTTTCCTAAGGCATGCTTATCGTACTGCGAGAAGAGTGAAGTTATTGCAAAGGATGGGCAGTGCAAGGGCACCGGTTGTTGCAATACTACCGTGCCTGAGGACTCACAGGGACATGGCTTGTCGTTAATGTCTTATTTTTTTGAAAATTCGGTATTAAACAACTCTCAAGTGATTGACTATAACCCTTGTGGTTATGCGTTTCTGGTGGAAAATGGAGCCTACAAATTTGAGACCGCACATCTCAACAAGCTGGAGAACACTACCTTCCCGGTGGTGCTTGATTGGACTGTAGGAGGGAACCAGACTTGTGAAGGAGCCAAGAAAAACCATTCCAGCTATGCTTGTAAGGCGCAGTACAGCACATGTGTAGATTCAAAGAAGCGCCCTGGCTACCTTTGCAAATGTCCTCCTGGTTTTCAGGGTAACCCTTACCTCCATTATGGTTGCAAAGATGTTGATGAGTGCAAGGAAGCCAATAAATTTTGCGTTGAACAAGCAACATGCAAGAACCTTATTGGGAGCTACCGTTGTGTGTGTCCAGAAGGATACACTGGAAATGGAAAAATTCATACAAATGGAAATGAAACACATGGATGCACTCCTCTTTCAGAAATCAACATCGTCAATACGAAAACGCCCAAACAACACAACAGTCAGAAAACTGCTTTATTGTTTGTCAGTGTAAGCATCATAGCGCTGTTCTTGGTGATCTTCAATGTGTATTGCGGATTGAAGAAAAGAAAGCTCAATAAAATTAAACAACAATTTTTTCAACAAAACGGTGGCCTACTACTGCAACAAAAAATTGCCAGACAGAAAGGTTCAATTGAAATCGCTAACATCTATAGCATAGAAGAGCTAAAAAAGGCCACTAACAACTTTGATGAAGGCAAGATCTTAGGCCGAGGAGGCTATGGAATAGTTTACAAAGGAGTCTTACAAGACAATACAACTGTGGCAATCAAAAAGTCCAAAATCAGTGATCAAAGCCAGATTGAACAATTCATCAATGAGGTGATTATACTTTCCCAAATCAACCATATAAATGTGGTTAAACTCTTAGGGTGTTGCTTAGAGACACAAGTCCCATTACTCGTTTACGAATTCATTCAAGGTGGCACTCTCGATGATCATCTTCATGGTCAGAACCAATCTTTAAAGCTTAACTGGAAAACAAGATTGAGAATAGCTGCAGAAACTGCTGGTGCCTTGGCATACTTGCATTCCGCAACTTGTCCACCCATCATACACAGAGATGTGAAGACTACTAACATACTTCTTGATCATAATCTCAAAGCAAAGGTTGCTGATTTCGGAGCTTCAAAGATTGTTCCTCTGGATCAAACTCAGTTTACCACTTTGGTGCAAGGGACAATAGGGTACCTTGACCCGGAATACTTCCACACAAGCCACTTAACAGAAAAGAGTGATGTGTATAGTTTCGGAGTCGTTCTAGCAGAGCTTCTAACAGGACGAAAAGCACTTCGTTTTGATCTGCCTGAGGATGATAGAAACCTTGCAATGTGCTTCATTTCTTCAATGAATAAGGGTCATTTAATTCAGATTCTGGACAAACAGATAACAAATGAGGCAAAGTCTAAGCAATTGATGGAATTTGCCAATATTGCAAAACGATGTTTGAGGTTGAAGGGGGAAGAAAGGCCAACTATGAAAGAAGTGGCAACGGAACTTGAGGGACTCAGAATAATGGAAAACCACAGGTGGGAAAGTGTTAGATCATCTTTAGAAGAGAGTGAAAATTTGCTCAATGCATCATCATCTTCATCATTATTCCCCGCTTATTACAGTGAAGATGGAGCTTATGGAAGGGGCATTATGTCTAGGTTGGAAAGCATAAGTCAGATTAGTATTTCATTAGGTGGAAGGTGA 2418 0.4214 MAVEHSLKLKLPLLLLIVIAAIDSYCAAAREVAAGIQVIPKKCKRRCGHVSIEYPFGTTKECSLDTEFLIDCTNNGPYLSNLLPYNDNPIQVLSLSVDAAELRVSLPVASDCYYTNSSSKKGHFFNNETDQFMFLGNYSISTSRNMFTTVGCQTLGLVVGRSYYSVEDDEIISTQAFPKACLSYCEKSEVIAKDGQCKGTGCCNTTVPEDSQGHGLSLMSYFFENSVLNNSQVIDYNPCGYAFLVENGAYKFETAHLNKLENTTFPVVLDWTVGGNQTCEGAKKNHSSYACKAQYSTCVDSKKRPGYLCKCPPGFQGNPYLHYGCKDVDECKEANKFCVEQATCKNLIGSYRCVCPEGYTGNGKIHTNGNETHGCTPLSEINIVNTKTPKQHNSQKTALLFVSVSIIALFLVIFNVYCGLKKRKLNKIKQQFFQQNGGLLLQQKIARQKGSIEIANIYSIEELKKATNNFDEGKILGRGGYGIVYKGVLQDNTTVAIKKSKISDQSQIEQFINEVIILSQINHINVVKLLGCCLETQVPLLVYEFIQGGTLDDHLHGQNQSLKLNWKTRLRIAAETAGALAYLHSATCPPIIHRDVKTTNILLDHNLKAKVADFGASKIVPLDQTQFTTLVQGTIGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALRFDLPEDDRNLAMCFISSMNKGHLIQILDKQITNEAKSKQLMEFANIAKRCLRLKGEERPTMKEVATELEGLRIMENHRWESVRSSLEESENLLNASSSSSLFPAYYSEDGAYGRGIMSRLESISQISISLGGR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152785g00001 805 FunFam Wall-associated receptor kinase 2 440 545 - -
Stsc152785g00001 805 Gene3D Laminin 276 329 - -
Stsc152785g00001 805 Pfam Wall-associated receptor kinase galacturonan-binding 43 104 IPR025287 GO:0030247
Stsc152785g00001 805 SUPERFAMILY EGF/Laminin 323 362 - -
Stsc152785g00001 805 Gene3D Laminin 330 367 - -
Stsc152785g00001 805 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 344 355 IPR000152 -
Stsc152785g00001 805 FunFam Wall-associated receptor kinase 2 546 763 - -
Stsc152785g00001 805 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 40 750 IPR045274 GO:0007166
Stsc152785g00001 805 CDD EGF_CA 327 361 - -
Stsc152785g00001 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Stsc152785g00001 805 ProSiteProfiles EGF-like domain profile. 327 362 IPR000742 -
Stsc152785g00001 805 SMART egf_5 278 326 IPR000742 -
Stsc152785g00001 805 SMART egf_5 330 376 IPR000742 -
Stsc152785g00001 805 ProSiteProfiles Protein kinase domain profile. 470 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152785g00001 805 Gene3D Transferase(Phosphotransferase) domain 1 546 765 - -
Stsc152785g00001 805 Pfam Calcium-binding EGF domain 327 364 IPR001881 GO:0005509
Stsc152785g00001 805 SUPERFAMILY Protein kinase-like (PK-like) 455 752 IPR011009 -
Stsc152785g00001 805 Pfam Protein tyrosine and serine/threonine kinase 473 740 IPR001245 GO:0004672|GO:0006468
Stsc152785g00001 805 ProSitePatterns Protein kinases ATP-binding region signature. 476 499 IPR017441 GO:0005524
Stsc152785g00001 805 SMART egfca_6 283 326 IPR001881 GO:0005509
Stsc152785g00001 805 SMART egfca_6 327 376 IPR001881 GO:0005509
Stsc152785g00001 805 CDD STKc_IRAK 476 743 - -
Stsc152785g00001 805 FunFam Fibrillin 2 322 367 - -
Stsc152785g00001 805 Pfam EGF-like domain 297 318 IPR000742 -
Stsc152785g00001 805 ProSitePatterns Calcium-binding EGF-like domain signature. 327 353 IPR018097 GO:0005509
Stsc152785g00001 805 Gene3D Phosphorylase Kinase; domain 1 442 545 - -
Stsc152785g00001 805 SMART serkin_6 470 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152785g00001 Stsc-Chr152785 5413 8659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152785g00001 17 751 Receptor kinase-like Gene Family AT1G21230 44.340 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc152785g00001 PK_Tyr_Ser-Thr 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152785g00001 - - ahf:112763858 1078.54