Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152773g00003 ATGGTTGCCCAACACCCTCAGCCTCAGCCACAGCCACAGCCACAGCCACAGCCACAGCAACCTCCTTCCTCTGCACAAGATGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGGGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTGCGTTCCGTCATCCGCCACTTGATGGCTTGTTGGGTTCACCGGCAGCCACTGCTCCTGGGCCATCTGTTCCCTCGCCACAGATTCCAACGACATCTGCAGCACCTACGACACCTTATAATTCTACTAAACAAGCTGTCCCTTGTATTTTCTTTCAAAAGGGCCTTTGCTTAAAAGGTGATAGATGTGCATTCTTGCATGGACCAAATCCTACTGCTAGTAACAAAGCTATTAATCAGGTCCCAGTGACTAGCCAGGGAACTGAGACTCCAACTTTTAAGAAGCCATTTGGCAGCGGTGATAAATATGCACAAGAAACGAGAAGCTCCCAAGGAAACATTGCAAAACTAGTTGGAGGTCCTGAAATTAAACCTTCTCAAAAGGTTGAAACTTTTCCACTAAGAACTAATTTCGAATTGGAGAAGGAGAAGCGCGTGGCACCACCATCTGCAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTGCTGCTGCCCATTCTAATCGACTGCATCAAGTTCGTGTGCCTGATGATCATGGTTTCCACAATGGCAAGGACAGTGATGAGTTCCTCAGAGAATCCTCTCCTGGATTTGATGTTCTTGTAGCTGATGAGCTTAGAAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAACACAAGAGGTCCAGATGAAAGGAACTTGGACTCTTTGAATGAGTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCGCGTGATATTGATCAAGAAAGATTTCGTGTGCCCCAACCGTACAACTCATATGATCATATGCAAGAGCCGTATGCTTGGGAGCAGCATAGAAAGGCCCCGGGCCATTTAGAAAGGAGGCCTCACCGCAGATCTGATAGTCCTGAGAATGTAGAGGTCTCAGATCTCCGACATCGTTTGTCTAAGCGCAGGAGGGTCAACGGTTTGAAATCTGTTGTGTCTAATGACTTTGATAGCCATGGTGAGCAACAAAGTCACCGGTTCTCCTCTAGGAAGGATTCGCACCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGTGCTGATGATCACCCGGAGAGAGAATCAGACAGAGGAAGAATTAGGAGCAGATTGTCAACTGGAAGGTTGCCAACCCCGCACCAAGGAAGGCTCCAAGACAGAATTAGAGGAAGGGTGCAGGATGATGAGAGGAGAAACTTCAGGGAACGATCAACAGGGAGAGAAGTAGCAGGGGACAAAAGAAGTGATTTTTCTGGGCCTAAAAGGCTTTCTGAACTTAAGAATGGGAGGAGCTCTGAGTATTCACTGGGAAAGAGAAAGAGTCTAACGGAACAGTCCCAATCAGAGGATGATTTTCAGTTTGACGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAAGAGTTAAAGCTGGTGTATCCTCACAGAATGAAATTGTCCATAGCTATGATGATCCAGCTGTGACAAACACACCAAATGGAGCATTGCATGAGACCAAGGAAGGTGCTAAGAACCACTCACTAGTTAACGAAGAAGAAACCAAGCCTCAGGACACTGAAACAGCTGGAAGGGAGGTCGATAATAATGATGGAAATCATGATCAATCATATGAGGATGGAATGATCTATGATGAAGCCGCGGAGGACCAGGAGTATGAAGGCGATGAGCAAGGAGGTGGGGAGTATGATTATGAGCAAGGCGAGGAGGGGGAATATGATTATGAACAAGTTGAAGAGGGAGAAAATCCAGAGCAAGAATACATGGAAGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA 2103 0.4593 MVAQHPQPQPQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAPGPSVPSPQIPTTSAAPTTPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTASNKAINQVPVTSQGTETPTFKKPFGSGDKYAQETRSSQGNIAKLVGGPEIKPSQKVETFPLRTNFELEKEKRVAPPSAGFDDEASRFKMRSISPVANGPAAAHSNRLHQVRVPDDHGFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNTRGPDERNLDSLNEYDLGHSADYGLARDIDQERFRVPQPYNSYDHMQEPYAWEQHRKAPGHLERRPHRRSDSPENVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGEQQSHRFSSRKDSHQLPLNDRFRGRIKLPASGADDHPERESDRGRIRSRLSTGRLPTPHQGRLQDRIRGRVQDDERRNFRERSTGREVAGDKRSDFSGPKRLSELKNGRSSEYSLGKRKSLTEQSQSEDDFQFDGPKPLSEILKEKRRVKAGVSSQNEIVHSYDDPAVTNTPNGALHETKEGAKNHSLVNEEETKPQDTETAGREVDNNDGNHDQSYEDGMIYDEAAEDQEYEGDEQGGGEYDYEQGEEGEYDYEQVEEGENPEQEYMEDEDGDDFAKKIGVMTT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 529 546 - -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 414 464 - -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 93 119 - -
Stsc152773g00003 700 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 405 700 - -
Stsc152773g00003 700 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Stsc152773g00003 700 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Stsc152773g00003 700 SMART c3hfinal6 63 86 IPR000571 GO:0046872
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 300 321 - -
Stsc152773g00003 700 SUPERFAMILY CCCH zinc finger 123 147 IPR036855 GO:0046872
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 7 21 - -
Stsc152773g00003 700 Pfam Zinc-finger containing family 31 85 IPR041686 -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 366 393 - -
Stsc152773g00003 700 ProSiteProfiles Zinc finger C3H1-type profile. 30 59 IPR000571 GO:0046872
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 570 591 - -
Stsc152773g00003 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 148 IPR000571 GO:0046872
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 594 635 - -
Stsc152773g00003 700 FunFam Zinc finger CCCH domain-containing protein 17 24 87 - -
Stsc152773g00003 700 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 27 698 - -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 1 28 - -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 636 686 - -
Stsc152773g00003 700 MobiDBLite consensus disorder prediction 476 528 - -
Stsc152773g00003 700 Gene3D - 22 87 - -
Stsc152773g00003 700 Gene3D - 116 178 - -
Stsc152773g00003 700 ProSiteProfiles Zinc finger C3H1-type profile. 61 87 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152773g00003 Stsc-Chr152773 7090 10751 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc152773g00003 zf-CCCH_3 7.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152773g00003 - - gmx:100787836 863.218