Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc152749g00001 | AAACATATGGATGCTATGATTTCTTGCTCTAACAACTCCAAGCCTCTTATGACATTCCTTCTTCTCATAATTGTGTTAACCATCACAAATAAAGCCAATGGAAGAGAATTCCAACAATCAAACACGCTGTTCATAAGAAGCTCATGCAGCTCCACAACATACCCAAAACTATGCTACACCTCTTTGGTGAAGCATGCCGCATTCATTCAAACAAACCCGCTTCTTCTAACGGGGACAGCCCTCAACATCACTCTTTCCTCCGCCAAAACAACCTCCGCCGCCATGTCCACCATGGCCAGGACTCGCGGGATGGGGTCCAGGGAAGTGGCAGCCATGCAAGACTGTGTGGAGGTTCTGGCTGACTCCGTCCAGCAGCTCGGAAAATCTATCGCCGAGATGACTCACCTCAGGACAAGTAATTTTGAGAGAACAATGAGTGATGTTCAAACGTGGGTCAGCGCTGCTTTGACCGATGATACCACCTGCACCGATGGGTTCCAAGTGACCGCCGTGGCCGGAGATGTTAAGACCGCCGTCCGCGGCCGCATCGTGGAGGTGGCGCAACTCACTAGCAATGCCTTGGCTTTGATTAATCAGCTTGCCAATTCCCATGCTTAA | 618 | 0.5 | KHMDAMISCSNNSKPLMTFLLLIIVLTITNKANGREFQQSNTLFIRSSCSSTTYPKLCYTSLVKHAAFIQTNPLLLTGTALNITLSSAKTTSAAMSTMARTRGMGSREVAAMQDCVEVLADSVQQLGKSIAEMTHLRTSNFERTMSDVQTWVSAALTDDTTCTDGFQVTAVAGDVKTAVRGRIVEVAQLTSNALALINQLANSHA | 205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc152749g00001 | 205 | FunFam | Pectinesterase inhibitor 3 | 40 | 201 | - | - | |
| Stsc152749g00001 | 205 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 44 | 200 | IPR035513 | - | |
| Stsc152749g00001 | 205 | CDD | PMEI-like_3 | 47 | 202 | - | - | |
| Stsc152749g00001 | 205 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 20 | 196 | - | - | |
| Stsc152749g00001 | 205 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 41 | 202 | IPR035513 | - | |
| Stsc152749g00001 | 205 | SMART | PMEI_2 | 40 | 196 | IPR006501 | GO:0004857 | |
| Stsc152749g00001 | 205 | Pfam | Plant invertase/pectin methylesterase inhibitor | 44 | 196 | IPR006501 | GO:0004857 | |
| Stsc152749g00001 | 205 | NCBIfam | pectinesterase inhibitor domain | 15 | 200 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc152749g00001 | Stsc-Chr152749 | 2384 | 3180 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc152749g00001 | 45 | 200 | Carbohydrate Esterase | AT1G53830 | 28.481 | 1.89e-18 | 80.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc152749g00001 | - | - | gmx:100305537 | 231.491 |