Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152733g00001 ATGGCTTTGGAAGCTCTGAACTCGCCTACAGCGGCCTCTTTTGAGGACCACCACAGCGGCAACCACTTGGAATCTTGGACTAAAAGAAAGCGTTCAAGGCGTGGATCTTCTCAAGCTCACTTTGGTGATTGCCCAAATGGTAACAGTCCGTGCACGGAAGAGGAGTATCTCGCTCTATGCCTCATCATGCTTGCTCGCGGACACAGAGGAGCTGGCGCCGCCGTTCTTCCTCCGCCGCAACTTACCGCCGCAGATTCTTCAACCGCAGCTAAACTCAGCTACAAGTGCTCTGTCTGCAACAAGGCTTTTCCATCTTACCAAGCACTCGGCGGACACAAGGCGAGTCACCGGAAAAACACTACCACCGGAGGCAGCGGCGGAGATGAAATCTCTACTTCTTCCGCAGCTACCACCAGCTCCGCCACTGCCGTGTCCGGCGGCGGTTCAGGGAAATCGCACGAGTGTTCAATTTGTCACAAGACTTTCCCGACGGGGCAGGCGTTAGGCGGACACAAGAGGTGCCACTACGACGGCGGCGCCGCCGGGAGTGTAGGCGGTGCTACGACAGAGGAAGGTGTTGGATCTACTCACACCGCCTTCAGCCACCGCGATTTCGATCTTAACGTTGTTCCGGCGTACGGTGAATTCTCGAGGGATGAAGAAGTAGAGAGCCCTCACCCTGTGATGAAGAAGAAGCCACGTGCTTTCATGGTGCCGAAGATCGAAATCCCTCAAATCCATTAG 744 0.5551 MALEALNSPTAASFEDHHSGNHLESWTKRKRSRRGSSQAHFGDCPNGNSPCTEEEYLALCLIMLARGHRGAGAAVLPPPQLTAADSSTAAKLSYKCSVCNKAFPSYQALGGHKASHRKNTTTGGSGGDEISTSSAATTSSATAVSGGGSGKSHECSICHKTFPTGQALGGHKRCHYDGGAAGSVGGATTEEGVGSTHTAFSHRDFDLNVVPAYGEFSRDEEVESPHPVMKKKPRAFMVPKIEIPQIH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152733g00001 247 MobiDBLite consensus disorder prediction 114 149 - -
Stsc152733g00001 247 Gene3D Classic Zinc Finger 92 175 - -
Stsc152733g00001 247 Pfam C2H2-type zinc finger 94 118 - -
Stsc152733g00001 247 Pfam C2H2-type zinc finger 153 177 - -
Stsc152733g00001 247 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Stsc152733g00001 247 SUPERFAMILY beta-beta-alpha zinc fingers 94 175 IPR036236 -
Stsc152733g00001 247 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 213 IPR044653 GO:0003700
Stsc152733g00001 247 MobiDBLite consensus disorder prediction 1 45 - -
Stsc152733g00001 247 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Stsc152733g00001 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Stsc152733g00001 247 SMART c2h2final6 153 175 IPR013087 -
Stsc152733g00001 247 SMART c2h2final6 94 116 IPR013087 -
Stsc152733g00001 247 MobiDBLite consensus disorder prediction 110 151 - -
Stsc152733g00001 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152733g00001 Stsc-Chr152733 3458 4741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152733g00001 1 243 C2H2 Transcription Factor Family AT1G27730 47.410 4.53e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc152733g00001 zf-C2H2_6 2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152733g00001 - - qsa:O6P43_015998 243.047