Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152730g00004 ATGTGTGTGTCTATTACCGAAACCTTGACAATGCCACATTTTCCCAGGGATGCACACAAAATTGTTGAAGAGAAGCAGAAGAGGATTAATAATGCTCACAGAGCGATGCAAATTCTGAAAACTACTTGTGTAGTTTGGGCTAATCCAGCTTCGCAAGTATATTTAGCAGGATCCTTTGATGGTTGGTTCTCCCAGATAAAGATGGAGAAATCAAATACTGGCATATTTTCTGTGAGCTTGCAGCTGTATCCTGGAAAATACGAGATCAAATTTGTTGTTGATGGTGAATGGAGAGTTGATCCGCTGCGGCCTATTGTTACGAATAATGGTTATGAGAACAATCTGCTCGTGGTTCATGATTAG 363 0.405 MCVSITETLTMPHFPRDAHKIVEEKQKRINNAHRAMQILKTTCVVWANPASQVYLAGSFDGWFSQIKMEKSNTGIFSVSLQLYPGKYEIKFVVDGEWRVDPLRPIVTNNGYENNLLVVHD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152730g00004 120 SUPERFAMILY E set domains 41 120 IPR014756 -
Stsc152730g00004 120 CDD E_set_AMPKbeta_like_N 41 118 - -
Stsc152730g00004 120 Coils Coil 22 42 - -
Stsc152730g00004 120 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 16 119 - -
Stsc152730g00004 120 Gene3D Immunoglobulins 37 120 IPR013783 -
Stsc152730g00004 120 Pfam Glycogen recognition site of AMP-activated protein kinase 42 119 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152730g00004 Stsc-Chr152730 10778 12145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152730g00004 45 120 Protein tyrosine phosphatase (PTP) family AT3G01510 32.911 1.78e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152730g00004 - - ahf:112797483 183.726