Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152730g00003 ATGAATGCTCAGGACAGACTGCGTTCAATACGTGCTAAGTTGGCAGTATTAGAAGGAAAGATGTCATTGGCAATAATGGATGCACACAAAATTGTTGAAGAGAAGCAGAAGAGGATTAATAATGCTCACAGAGCGATGCAAATTCTGAAAACTACTTGTGTAGTTTGGGCTAATCCAGCTTCGCAAGTATATTTAGCAGGATCCTTTGATGGTTGGTTCTCCCAGATAAAGATGGAGAAATCAAATACTGGCATATTTTCTGTGAGCTTGCAGCTGTATCCTGGAAAATACGAGATCAAATTTGTTGTTGATGGTGAATGGAGAGTTGATCCGCTGCGGCCTATTGTTACGAATAATGGTTATGAGAACAATCTGCTCGTGGTTCATGATTAG 393 0.402 MNAQDRLRSIRAKLAVLEGKMSLAIMDAHKIVEEKQKRINNAHRAMQILKTTCVVWANPASQVYLAGSFDGWFSQIKMEKSNTGIFSVSLQLYPGKYEIKFVVDGEWRVDPLRPIVTNNGYENNLLVVHD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152730g00003 130 Gene3D Immunoglobulins 47 130 IPR013783 -
Stsc152730g00003 130 CDD E_set_AMPKbeta_like_N 51 128 - -
Stsc152730g00003 130 Pfam Glycogen recognition site of AMP-activated protein kinase 52 129 IPR032640 -
Stsc152730g00003 130 SUPERFAMILY E set domains 51 129 IPR014756 -
Stsc152730g00003 130 Coils Coil 32 52 - -
Stsc152730g00003 130 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152730g00003 Stsc-Chr152730 10778 12145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152730g00003 55 130 Protein tyrosine phosphatase (PTP) family AT3G01510 32.911 2.15e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152730g00003 - - adu:107485831 228.794