Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152730g00001 ATGAGTCGCAAAAGAGACAAACCCTCTTACACTTCTTCCCGCCACGCTCCCTACCCCAAGCGCCGCCGTCCTCCACCGGAGCATGCGCTTCAGCAGGAGGAGGAGGACCGACCAACCTCGAGGCCTGCCCCGCCGTCGGCGGTGGTCGTCATGGGCCTCCCCAACGACTGCTCCGTCCTCGACCTCAAGTCCCGCTTCGAGATCTATGGCCCCATTGCTCGCATCCGCATCGACGGCGACGCCGTCGGATATGTTACCTACCGGACCAAGGACTCTGCTGACGCGGCTATTGCCGCCGGCGCCGACCCTTCCTTTGGAATCACTCTTCTCTCAAAAAAGGTTCAGGTGTTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAATTGGTAACAACAAGGAGAAAGGGTCAATGTCAAAGCTTGTGCGCGCTGAGGTACCTTTGAGAAGACATGGAAGGGGTAATAGGCTTGCTTCAGCTATAGGCAATACCAGAACCAGTGATGATAACTCAGGTAGCTCAGTTCTTGAAGCGCCTTTCAAGGGAAGAGAAATAGTTGCTTATGATGATATTCTCTGA 582 0.555 MSRKRDKPSYTSSRHAPYPKRRRPPPEHALQQEEEDRPTSRPAPPSAVVVMGLPNDCSVLDLKSRFEIYGPIARIRIDGDAVGYVTYRTKDSADAAIAAGADPSFGITLLSKKVQVLWATDPLAMWREGIGNNKEKGSMSKLVRAEVPLRRHGRGNRLASAIGNTRTSDDNSGSSVLEAPFKGREIVAYDDIL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152730g00001 193 PANTHER GEO13361P1-RELATED 41 148 - -
Stsc152730g00001 193 SUPERFAMILY RNA-binding domain, RBD 24 129 IPR035979 GO:0003676
Stsc152730g00001 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Stsc152730g00001 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 98 IPR000504 GO:0003723
Stsc152730g00001 193 MobiDBLite consensus disorder prediction 20 40 - -
Stsc152730g00001 193 MobiDBLite consensus disorder prediction 1 46 - -
Stsc152730g00001 193 SMART rrm1_1 47 117 IPR000504 GO:0003723
Stsc152730g00001 193 Gene3D - 1 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152730g00001 Stsc-Chr152730 4438 5903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152730g00001 1 193 Homeobox Transcription Factor Family AT1G27050 54.589 1.70e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152730g00001 - - gmx:106797175 280.026