Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152713g00002 ATGATAACTTTACATTTCCTCTCTTCTCCCCTTATTATTAATATTCACTCATTCATAATAATATACTTTTCTCTTCTAACAAGAATCACTCTGTGTAGTGTGAATCCAAAGTTCCAGGCATGTGAGCCCAAAACTTGCGGTGCTACTAATAACCAAAACATAAGCTTTCCCTTCTACATCATAGGAAAACAAAGCTCCTATTGTGGATTCCCCAATTTCGGTCTCACCTGCTCTCACGATGGCTTCCCAATCGTCAATATCTCAGCAACTCTGTACACTGTCCAAAATATTTTCTACAACAACCAATCACTTCGAGTGTCCATCCCTGCGCTCTCGGAACCAAGAAACACGGAATGTATTGCCCCAGTGACAAACTACAGCGGCGACGCCCAAAGGTTCAGTGTTGCTCCGAAGCAGAAGCAAATGTTGCTGTTCTATGGCTGCGAGAACATGCGGAATCACAGTATTGGGTGTTCAGCTGAAAACAGAACGAGATCGGTCGTGGCCATTTATGGGGATGATGTTGAGAATTTAAAGTTGGCTCGGAAGAATTGCAATGTTACGACGGTGAGCGTGACAACGGTGGATGAAGATGAGAAAGGAGGGATTGAAGAGGGATTGAGAAGAGGGTTTTTGATGAATTGGAGGGCCAGAAATTGCAGCGAGTGCTCTAGCAGTGGTGGGAGGTGTGGGTTCGATGAAGAAGAGTATGCTTTCATATGCTATTGTCCTGATAGAATCGATTCAGAGAGCTGTTATCCACAACCAGGTGCAATAGCAGCTGCAGTAATTGCAGGATTGTTGAGTCTTTGTTATTTTGCATACAAGTCACCAAGATGGCGAGAAAAATATTGCTTTCCCACGAAAAGTAACCAAGATATTGAAACCTTCTTAAAAAATCATGGAGTTTTAACTATAAAAAGATACAAATTCTCTGATGTGAAGAAAATGACCAAATCATTCAAAGTTAAACTAGGACAAGGTGGTTTCGGTGCTGTATACAAGGGAGTGTTACCTAATGGAACTCATGTGGCGGTCAAAATGTTGAATCCATCCAAAGGAAATGGCAAAGAGTTTATCAATGAGGTAGCTAGCATTAGCAGAACTTCTCATGTCAATGTTGTCACCCTTCTTGGGTTCTGCTTCCAAGGCGACAAGAAAGTTCTTATTTATGAGTTTATATCTAATGGTTCTCTTGACAAGTTTATTTACAGAAAAGAAGGATTTGAAACTACTTCATTGTTGAGTTGGGATAAGTTGTATCAAATTTCCATAGGGATAGCTAGAGGGCTAGAGTACTTGCATAGAGGATGCAACACTCAAATTTTACATTTTGACATAAAGCCGCATAACATTCTTTTAGATGATAACTTTTGTCCCAAGATATCAGATTTCGGGCTAGCAAAACTTTGTCCCGGGAAAGAAAGTCTTATTTCCATGTCGGATGCTAGAGGAACAATAGGGTATATAGCTCCAGAAGTGTGGAATAGGCATTTTGGTAAAGCTTCTCACAAATCTGATGTTTATAGTTACGGAATGATGCTTCTTGATATAGTGGCAGGAAAGGAGAACATTAACGTAGAAGGTAGTCAAACGAGTGAGGTATATTTCCCTGAATGGATATACAAAAGGGTTGAGCAAGAAGGCACTCAAGGTGGAGAGGTGGCAACAGAGGAAAATGAAGTAATTAAGAAAATGACAGTGGTGGGTTTATGGTGTGTTCAAACAATGCCAAATGATAGACCTACAATGAGCAAAGTTGTAGAAATGTTAGAAGGCAACACAGATTCCATAGAAATGCCACCAAGACCTGCTCTGTCTTCTCCTGTAAGATCGATTGCTGAATCTTCTACTTTGGTAAATTAA 1866 0.4035 MITLHFLSSPLIINIHSFIIIYFSLLTRITLCSVNPKFQACEPKTCGATNNQNISFPFYIIGKQSSYCGFPNFGLTCSHDGFPIVNISATLYTVQNIFYNNQSLRVSIPALSEPRNTECIAPVTNYSGDAQRFSVAPKQKQMLLFYGCENMRNHSIGCSAENRTRSVVAIYGDDVENLKLARKNCNVTTVSVTTVDEDEKGGIEEGLRRGFLMNWRARNCSECSSSGGRCGFDEEEYAFICYCPDRIDSESCYPQPGAIAAAVIAGLLSLCYFAYKSPRWREKYCFPTKSNQDIETFLKNHGVLTIKRYKFSDVKKMTKSFKVKLGQGGFGAVYKGVLPNGTHVAVKMLNPSKGNGKEFINEVASISRTSHVNVVTLLGFCFQGDKKVLIYEFISNGSLDKFIYRKEGFETTSLLSWDKLYQISIGIARGLEYLHRGCNTQILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESLISMSDARGTIGYIAPEVWNRHFGKASHKSDVYSYGMMLLDIVAGKENINVEGSQTSEVYFPEWIYKRVEQEGTQGGEVATEENEVIKKMTVVGLWCVQTMPNDRPTMSKVVEMLEGNTDSIEMPPRPALSSPVRSIAESSTLVN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152713g00002 621 Gene3D Transferase(Phosphotransferase) domain 1 394 601 - -
Stsc152713g00002 621 SUPERFAMILY Protein kinase-like (PK-like) 302 592 IPR011009 -
Stsc152713g00002 621 FunFam serine/threonine-protein kinase PBS1-like 288 393 - -
Stsc152713g00002 621 FunFam PR5-like receptor kinase 394 602 - -
Stsc152713g00002 621 CDD STKc_IRAK 325 593 - -
Stsc152713g00002 621 MobiDBLite consensus disorder prediction 595 621 - -
Stsc152713g00002 621 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Stsc152713g00002 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 291 608 IPR045874 GO:0004672
Stsc152713g00002 621 Gene3D Phosphorylase Kinase; domain 1 285 393 - -
Stsc152713g00002 621 Pfam Wall-associated receptor kinase C-terminal 176 245 IPR032872 -
Stsc152713g00002 621 Pfam Protein tyrosine and serine/threonine kinase 321 591 IPR001245 GO:0004672|GO:0006468
Stsc152713g00002 621 SMART serkin_6 319 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152713g00002 621 ProSiteProfiles Protein kinase domain profile. 319 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152713g00002 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Stsc152713g00002 621 Pfam Wall-associated receptor kinase galacturonan-binding 41 107 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152713g00002 Stsc-Chr152713 3045 6922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152713g00002 16 619 Receptor kinase-like Gene Family AT1G66910 39.631 1.19e-137 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc152713g00002 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152713g00002 - - adu:107490347 941.414