Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc152672g00002 | ATGGAAGCACCGCGGTGGGTGCGAGACCTGCAATCCCAAGAGACGTATAAGGTATGTGTCGACTACTCTCAGAAGAACCCATCGTGGGCCTCCATCTTCTACGACCTCTTCATGTGCCTTGAATGCTCGGCAAGTACTGCAGCCTCAGCATCCACATCTCCTTCGTTAGATCCGTCACCATGGACTCGTGGTAACGCGTGTTTTCGTCGCGAACCCGACCGTTCGTAA | 228 | 0.5395 | MEAPRWVRDLQSQETYKVCVDYSQKNPSWASIFYDLFMCLECSASTAASASTSPSLDPSPWTRGNACFRREPDRS | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc152672g00002 | 75 | MobiDBLite | consensus disorder prediction | 49 | 75 | - | - | |
| Stsc152672g00002 | 75 | Gene3D | Arf GTPase activating protein | 1 | 62 | IPR038508 | - | |
| Stsc152672g00002 | 75 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED | 1 | 44 | IPR044519 | GO:0005096|GO:0016192 | |
| Stsc152672g00002 | 75 | Pfam | Putative GTPase activating protein for Arf | 7 | 45 | IPR001164 | GO:0005096 | |
| Stsc152672g00002 | 75 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 5 | 44 | IPR037278 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc152672g00002 | Stsc-Chr152672 | 8053 | 8709 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc152672g00002 | 5 | 57 | C2H2 Transcription Factor Family | AT4G05330 | 37.931 | 9.17e-06 | 39.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc152672g00002 | K12492 | - | ncol:116254346 | 65.855 |