Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152653g00005 ATGGCTGGAGTTCTTGTTGGTGGAGCTTTTCTGTCTGGCTTCATTAATGTTGTCCTTGACAGGCTCATATCTGCTGAATCTGTCAACTTTGTTGTGGGCAAGAAGCTTGACCGGAAGTTAGTTGAGAGGCTGCAGACCGCTCTCTTGGCGGCCGAAGCCCTGGTTGCTGACGCTGAGCAGAAGCAGCTGGGAAATGAATTTGTCAGGAAATGGCTTGATAGTCTCTGGGATGCTGTCTACACTGCTGATGACTTGCTGGACACTCTTCTCACCAAAGCTGCAACTCATCAAAAGAAGGTACCTACTTTCTGGGACAGATTCTTGAACTTTGAAGATAGCAAGATGATGAATAAGATAGAGGAGGTGGTTAGAAGGATAGAGGATCTTGGAAAACTTAAAGATTCCCTTTGTCTTGAAAAGATTCCCACTGATAGCTCTTCATGGTGGACGCCGTCAAGTTCTCTTGTAAGAGAGAATGTGTATGGCAGGGAGGATGACAAGAAGGCCTTAATCAAGATGATGAATGACAATAATGAGCATCATTTGTCTGAGATCTCTATTGTCGGCATTGGCGGGGTTGGTAAAACTACTTTAGCTCAATGGCTGTACAACAATGAGGATCTGATGAAGGAGTTTGATATGAAAGCATGGGTTTGCGTTTCGCAGGATTTTGATATCGTTGACACTACAAAGAATGTCTTAAAAGGGATCCTTGGAGGTTCTTGTAGTAGTCTTGATGATTTCAATTCACTTCAACTTGCATTGAAGCAAAAACTCTCTAACAAAAAGTTTTTCATTGTTCTGGATGATGTTTGGAGCTATGATGGTGACAGATGGAGTAACTTTATAACCCCTTTTCGATATGGGAAGAAGGGAAGTACTATTTTTCTGACTACTCGCGAGAAGAATGTTGCTTCGGTTGTTCAAAATTGTCAACCTTACTTTCTGAATAAGTTATCCAAAGACTCTTGCTGGTCAGTGTTAGCAGACAATGCATGTTTTCCGCAATCAAATGGGAGTGCAGCACTTGATGAAATAGGTAGAAAGATTGTTGACAAGTGTGATGGCTTGCCTTTAGCTGCAGAAACACTTGGGCGCTTGTTGCGGACAAAGCATGATGCTGAGAAATGGAAGAAGATATTAAGGAGTGATATTTGGGATATTCCTATGAGAGATAGTAATATTATTCCAGCATTGTTAATAAGTTACTATCATCTTCCTGCATATTTAAAGCGTTGCTTTGTTTATTGTTCACTATTTCCAAAGGGTCATCTATTTGAGAAAGATGAGTTGATACTATTGTGGATGGCAGAAGATCTTTTACGACCGCCAAAGAAAGGAGAGACTTTGGAAGAAGTTGGTGGCGAGTGTTTCGATGAGTTAGCTTCCAGATTGTTCTTCACACAGTATTTTAAAGATGGTGAGAGCTATTTTGTGATGCATGATCTCTTGCTTGACTTAGCAGTGTTCCTTGCTGGAGACTTCTACTTCAGATTGGAAGAACTTGGTGAAGAAGAAGAAGAGATAAGTATTCAGACTCGTCATCTGTGTGGAAATTTACATCATTGTAGCTCAAAACTCTTCAATTCTATTTCTAAGGTGGAATCTCTGAGGACATTATTGTATAACAAATTCACCTCTCCTTCCTTCAACATTGAAGCTGCAACATGTGAGGTATTATCCAAGTGCAAGTACTTGCGAGTTTTATCATTTCATAAGCTTGATGTGTTGCCTGATTCGATAGGCGAATTGATTCATTTGCGTTACTTGGATCTCTCTTTTTCGAACATTAAGACATTGCCTGAATCTTTCTGCAACTTGCATAATCTGCAAACTTTGAAGCTGTACTATTGCACTAAGCTAACAATGCTGCCTAGTGGTATGCATAATCTTGTGGAGTTGCGGCATCTTGATCTTAGGGGAACATCTTTAAAGGAAATGCCCAGAGAATTCAGCAAATTGAAACACCTGCAGATTTTGAGAAACTTTGTTGTGGGCAAGAACAAAGACAGCAATGGACTTGAAGAAATAGGAGGGCTTTCGAATCTTCATGGACTATTTTGGATTTCAAAATTGGAGAATATTGTTGACGTGCAAGAAGCAAGGAATGCAAGAATAATTGATAAGACACACATAGAAGAATTAAACTTGGAATGGTCATCTGGTGGTGATGATATGGTTTCCAACACACAAACCGAAAGAGATATACTCGACAGCTTGCAACCGCACAACGGCTTGAAAGAGTTGAGAATCAAGGGATACAAGGGTACCATATTTCCAAAATGGATTGGAAGTTGTTCCTTCTACAACATGACAAGTGTGTATCTAGCATCATGCAACAATTGCTGCATGTTGCCTTCACTTGGAGAGCTTCCATCTCTTCAGTCACTGCATATTGAAGGTTTTGGTCAGCTAAAGAGTATTGGCATGGAGTTTTACAAGAATGAAGACAGCCATCAATCTTCTTCAATTGAACCGTTTCCTTCACTGCAGAATCTGGAATTTCATGACATGCCATGTTGGCAAGTGTGGGAGTTAGCAGGAAACCGTTTACCTACTGTTGCGGAAACGTGGATAATTTTCAATACAAATCAATCCTATGAGTTTTACTATTATAGTAATTCCCAGGACAGATTGGATGAG 2643 0.4026 MAGVLVGGAFLSGFINVVLDRLISAESVNFVVGKKLDRKLVERLQTALLAAEALVADAEQKQLGNEFVRKWLDSLWDAVYTADDLLDTLLTKAATHQKKVPTFWDRFLNFEDSKMMNKIEEVVRRIEDLGKLKDSLCLEKIPTDSSSWWTPSSSLVRENVYGREDDKKALIKMMNDNNEHHLSEISIVGIGGVGKTTLAQWLYNNEDLMKEFDMKAWVCVSQDFDIVDTTKNVLKGILGGSCSSLDDFNSLQLALKQKLSNKKFFIVLDDVWSYDGDRWSNFITPFRYGKKGSTIFLTTREKNVASVVQNCQPYFLNKLSKDSCWSVLADNACFPQSNGSAALDEIGRKIVDKCDGLPLAAETLGRLLRTKHDAEKWKKILRSDIWDIPMRDSNIIPALLISYYHLPAYLKRCFVYCSLFPKGHLFEKDELILLWMAEDLLRPPKKGETLEEVGGECFDELASRLFFTQYFKDGESYFVMHDLLLDLAVFLAGDFYFRLEELGEEEEEISIQTRHLCGNLHHCSSKLFNSISKVESLRTLLYNKFTSPSFNIEAATCEVLSKCKYLRVLSFHKLDVLPDSIGELIHLRYLDLSFSNIKTLPESFCNLHNLQTLKLYYCTKLTMLPSGMHNLVELRHLDLRGTSLKEMPREFSKLKHLQILRNFVVGKNKDSNGLEEIGGLSNLHGLFWISKLENIVDVQEARNARIIDKTHIEELNLEWSSGGDDMVSNTQTERDILDSLQPHNGLKELRIKGYKGTIFPKWIGSCSFYNMTSVYLASCNNCCMLPSLGELPSLQSLHIEGFGQLKSIGMEFYKNEDSHQSSSIEPFPSLQNLEFHDMPCWQVWELAGNRLPTVAETWIIFNTNQSYEFYYYSNSQDRLDE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152653g00005 881 SMART LRR_typ_2 631 653 IPR003591 -
Stsc152653g00005 881 SMART LRR_typ_2 584 607 IPR003591 -
Stsc152653g00005 881 Gene3D Ribonuclease Inhibitor 516 875 IPR032675 -
Stsc152653g00005 881 PRINTS Disease resistance protein signature 184 199 - -
Stsc152653g00005 881 PRINTS Disease resistance protein signature 258 272 - -
Stsc152653g00005 881 PRINTS Disease resistance protein signature 354 368 - -
Stsc152653g00005 881 PRINTS Disease resistance protein signature 605 621 - -
Stsc152653g00005 881 Pfam NB-ARC domain 163 381 IPR002182 GO:0043531
Stsc152653g00005 881 Gene3D - 318 401 IPR042197 -
Stsc152653g00005 881 Coils Coil 41 61 - -
Stsc152653g00005 881 Gene3D - 152 313 IPR027417 -
Stsc152653g00005 881 Gene3D - 15 130 - -
Stsc152653g00005 881 Gene3D - 402 489 IPR036388 -
Stsc152653g00005 881 PANTHER DISEASE RESISTANCE PROTEIN RP 43 835 IPR044974 GO:0006952
Stsc152653g00005 881 SUPERFAMILY L domain-like 479 856 - -
Stsc152653g00005 881 Pfam Rx N-terminal domain 37 99 IPR041118 -
Stsc152653g00005 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 417 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152653g00005 Stsc-Chr152653 10748 13390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152653g00005 577 675 WRKY Transcription Factor Family AT4G12020 37.736 1.14e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152653g00005 - - adu:107472750 1114.37