Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152653g00002 ATGGCTGCTGCACTTGTTGGTGGAGCATTTCTGTCTGGTTTCATCAATGTTGTCCTGGACAGGCTCATTTCTGCTGATTCTGTCAACTTGGTTGAGAGGCTCAAGAGTGCTCTGACGAATGCTGGATATCTTGTTGATGATGCAGAGCTGAAGCAACTGGAAAACTATGAAGTCAAGGATTGGCTCAACTCTCTCCGAGATGCTGTTCACACTGCTGATGACTTGCTGGACCGCGTCTGCACCAAAGCTGCAACTCAAAAGGGAGTTCGCACCTTCTTGTCTGGCTTCCTGAATTCTGAAGATAGGCACATGGTGAATGAGATAGAACGGGTGGTAAGAAGGATAGAAGATCTTGAGAAACGCAAAGGTTATCTTGGCCTGCAAAAGATTTCCACTTCTAGCTTCTCGTGGAAAACACCATCCACTTCTCTTGTTAGAGGGGATATGTGTGGCAGGAAGGATGACCAGGAGGCCTTAGTCGAGATGCTGAATGAGAACAATGAGCATCACTTGTCTGTGATCTCCATTGTTGGCATGGGAGGGGTTGGTAAAACTACTCTGGCGCAATGGATTTACAATAATGCAGACTTGATGAAGGGATTTGATGTGAAAGCATGGGCTTGCATTTCAGAAAACTTCAATATTGTGGAGACTACAAAGAATATTGTCAAGGAGATCCGTAAAGATACTCATGATCTTGGAAGCTTCAATTCAATTCAAGATGCTTTGAAGGAAGAATTGTCCAAAAAGAAGTTCTTTATTGTTTTAGATGATGATTTTCTAGCCCCTTTTCGATACGGGGCTAAGGGAAGTACTATTCTCCTAACTACTCGCGAGGCAAATGTTGGTTCAGTAGTTCAAACAAATTTTCATCTTCACTGTCTCGAACCATTATCAGAAGACTATTGCTGGTCTGTGTTTGCTGCCAATGCATCTTTTCCGGAATCCAATGGGAACCCAACACTGGAAGGAATAGGCAAGAAGATTGCAAGGAAGTGTGACGGTTTGCCATTAGCAGCAGAAACACTTGGTTGCTTGTGCAGAAAGCAGGATGCTGAAGAATGGGAAAAATTCTTAAGGAGTGAGATTTGGGGATTTTCTATAAATGACAGTAAGATTATTCCAGCTTTGTTGGTAAGTTATTATCAACTCCCTTCATATTTAAAGCGTTGCTTTGTTTATTCTTCGTTGTTTCCTAAAGATTATCAATTTGGGAAAGATGAACTAATTTTATTGTGGATGGCCCAAGATCTTTTAAGGCCACCAAACAAAGGAGATAGTTTGGAAGAAGTTGGTTGCAAGTGTTTTGAAGAATTAACTTCAAGGTTATTTTTTAAAAAGCTTCAAGATGATGATGATGATGATGATGATTATTTTGTGATGCATGATCTCTTGCATGACTTGGCAATATTCCTTGCCGGAGACTTCTATTGTAGAATAGAAGAGCTTAGCGAAGAACAAGAAGAGAAGAAGGTTCTCACTCGCCATTTCTCAAATTTTGAACGTGGAAGCTTAGATCATCCAATCTCAAAAGTCTTTAATTCCATTGCGAAGATGGAATCTCTGAGGACATCATTGTATCTAGAAGATTTGCTAAGCTTGGAAAGCACCGTGTCAAAGTTTAAATACTTGAGAGTCTTATCCTTCAGTAAACTTGATGTACTACCTGATTCAATAGGTGAATTGATTCATCTACGCTATTTGAATCTCTCTCGGACTAAGATTGAGGTTGCCAGAATCATTGTGCAACTTCATCTTGATCTTAGGGAAACTTCTTTGGAAGAAATGCCTGTAGGAATAAGCAAATTGAAACAGTTGCGTACTTTATATTACTTCGTTGTGGGCAAGAATGAAGATAATAGAACCCAGGAATTAGGAGGGCTCTTGAATCTTCATGGATCCCTGCACCTTGACAAGTTGGAGAATATTGTTGATGCGAAAGAAGCAGAGAATGCAAGGATGATAAACAAGAATCTCATGGACAAATTGTACTTGAAGTGGTCTGCAGGTGATGATATGGTTTCAAACACACAAACCCAAAGAGATATACTTGACAGCTTACAACCTCACAATGGTTTGAAAGAGTTGATAATCAAGGAATACAAGGGTACCATATTTCCAAATTGGGTTGGGCATTCTTCATACAACAAAATGACAAGAGTATCTCTAGAGTCTTGCAACAATTGCTGCATGCTTCCATCGCTTGGACTGCTGCCATCTCTTAAGAAGCTACGCATTCAAGGTTTTAGTAAGCTGGTAAGTGTTGGCATGGAGTTTTACAAGAATGAAGACTATCAACATTCGTCACCCATTGCAGCGTTTCCCTCACTTGAGGAATTGGAATTCCAGGATATGCCATGTTGGGAGGAGTGGTACTCGCCCGACTCAGAAGCTTAA 2397 0.4068 MAAALVGGAFLSGFINVVLDRLISADSVNLVERLKSALTNAGYLVDDAELKQLENYEVKDWLNSLRDAVHTADDLLDRVCTKAATQKGVRTFLSGFLNSEDRHMVNEIERVVRRIEDLEKRKGYLGLQKISTSSFSWKTPSTSLVRGDMCGRKDDQEALVEMLNENNEHHLSVISIVGMGGVGKTTLAQWIYNNADLMKGFDVKAWACISENFNIVETTKNIVKEIRKDTHDLGSFNSIQDALKEELSKKKFFIVLDDDFLAPFRYGAKGSTILLTTREANVGSVVQTNFHLHCLEPLSEDYCWSVFAANASFPESNGNPTLEGIGKKIARKCDGLPLAAETLGCLCRKQDAEEWEKFLRSEIWGFSINDSKIIPALLVSYYQLPSYLKRCFVYSSLFPKDYQFGKDELILLWMAQDLLRPPNKGDSLEEVGCKCFEELTSRLFFKKLQDDDDDDDDYFVMHDLLHDLAIFLAGDFYCRIEELSEEQEEKKVLTRHFSNFERGSLDHPISKVFNSIAKMESLRTSLYLEDLLSLESTVSKFKYLRVLSFSKLDVLPDSIGELIHLRYLNLSRTKIEVARIIVQLHLDLRETSLEEMPVGISKLKQLRTLYYFVVGKNEDNRTQELGGLLNLHGSLHLDKLENIVDAKEAENARMINKNLMDKLYLKWSAGDDMVSNTQTQRDILDSLQPHNGLKELIIKEYKGTIFPNWVGHSSYNKMTRVSLESCNNCCMLPSLGLLPSLKKLRIQGFSKLVSVGMEFYKNEDYQHSSPIAAFPSLEELEFQDMPCWEEWYSPDSEA 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152653g00002 798 Gene3D - 380 470 IPR036388 -
Stsc152653g00002 798 Gene3D - 138 292 IPR027417 -
Stsc152653g00002 798 Gene3D - 297 379 IPR042197 -
Stsc152653g00002 798 Gene3D Ribonuclease Inhibitor 494 795 IPR032675 -
Stsc152653g00002 798 Gene3D - 26 121 - -
Stsc152653g00002 798 PANTHER DISEASE RESISTANCE PROTEIN RP 60 782 IPR044974 GO:0006952
Stsc152653g00002 798 Pfam Rx N-terminal domain 30 99 IPR041118 -
Stsc152653g00002 798 Coils Coil 637 657 - -
Stsc152653g00002 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 394 IPR027417 -
Stsc152653g00002 798 Pfam NB-ARC domain 153 359 IPR002182 GO:0043531
Stsc152653g00002 798 SUPERFAMILY L domain-like 460 784 - -
Stsc152653g00002 798 PRINTS Disease resistance protein signature 173 188 - -
Stsc152653g00002 798 PRINTS Disease resistance protein signature 736 752 - -
Stsc152653g00002 798 PRINTS Disease resistance protein signature 246 260 - -
Stsc152653g00002 798 PRINTS Disease resistance protein signature 333 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152653g00002 Stsc-Chr152653 2457 4968 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152653g00002 171 360 WRKY Transcription Factor Family AT5G45050 24.272 1.28e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152653g00002 - - ahf:112733177 1124