Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152652g00001 ATGGCAGGGTTGTTTTCGTTAGGAGGCGGAGGTGGAGGAGGAGGAGGAAGAGGTGGCAATAACGGAAGCCACCAGGCCCCGGAACAACACCACCACCACATTCAAAGCACAGAAATTTCTCCTCCGGAAACCTTATTCTGGTACAAACAAAACGACGACGTTTCAACATACCGCGGTTTCGAGCTATGGAACCAGCATCAGCTTCAGCAGCAGCAGCAGCAACACGTGATATCACATCATCAAGCCCGCCCACTCTTCCACCGAGATCTCTACTCGTCGGCTGTTGCCCTTGGTGTGGGGCCCAGCAGCGCGTCTGATGAGCAGTCTCCGTCGAGATCGGCGGTGTTGGCGATGGCCGGAGGAGGAAGCGGAACAACGGGAATAAGCTGTCAAGATTGCGGGAACCAAGCGAAGAAAGACTGCCCTCACATGAGGTGCAGGACTTGTTGCAAGAGCCGTGGGTACGACTGCCAGACCCATGTGAAGAGCACATGGGTCCCGGCTGCGAAGCGCCGCGAGCGCCAGCAGCAGCTCGCGGCACTCCATGACCACCACCAGAACAGAGATGCTTCAAAGAGACCTAGAGATGCTGGTAATAATAGCAAAGACAACCCTTCCACTTCTTCAGCCCTTGTTTGCACCACTCGTTTGCCCTCCTCCACAGGGTTGGAGGTTGAGGAAGGGAATTTTCCAACAATAGTGAGCTCTCCTGCGGAGTTCAGGTGTGTGAGGGTTAGCCCGTTGGACGATGTGAACGAACAGTACGCGTACCAAACGGCCGTGAACATAGGAGGCCATTTGTTTAAAGGGATTCTTTATGACTACGGTCCTGATAGTACTGAAAATGCTAGCTACTACGGTGGTGGCGGCGAGGGATCTTCTTCGGCAATTGCTGGATCTCAGCGGTTGAACCTCATCGCGGCCACCGATGCAGCCACCACCGCAACCGCAACGGGCGCCCCCGGTGTCCCTCTTGTTGATCCTTCTTCCTCTTTGTACAATCCAGCTCCACTTAATACATACATGGCTGGTAGTAGTGGTACGCAATTCTTCCCTCATCACCCAAGATCTTGA 1074 0.5438 MAGLFSLGGGGGGGGGRGGNNGSHQAPEQHHHHIQSTEISPPETLFWYKQNDDVSTYRGFELWNQHQLQQQQQQHVISHHQARPLFHRDLYSSAVALGVGPSSASDEQSPSRSAVLAMAGGGSGTTGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQLAALHDHHQNRDASKRPRDAGNNSKDNPSTSSALVCTTRLPSSTGLEVEEGNFPTIVSSPAEFRCVRVSPLDDVNEQYAYQTAVNIGGHLFKGILYDYGPDSTENASYYGGGGEGSSSAIAGSQRLNLIAATDAATTATATGAPGVPLVDPSSSLYNPAPLNTYMAGSSGTQFFPHHPRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152652g00001 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 23 339 IPR007818 GO:0003700|GO:0006355
Stsc152652g00001 357 NCBIfam LRP1 C-terminal domain 230 277 IPR006511 -
Stsc152652g00001 357 MobiDBLite consensus disorder prediction 175 199 - -
Stsc152652g00001 357 Pfam Domain of unknown function (DUF702) 127 278 - -
Stsc152652g00001 357 MobiDBLite consensus disorder prediction 168 210 - -
Stsc152652g00001 357 NCBIfam putative zinc finger domain, LRP1 type 129 171 IPR006510 -
Stsc152652g00001 357 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152652g00001 Stsc-Chr152652 8565 10859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152652g00001 1 357 C2H2 Transcription Factor Family AT3G51060 46.482 3.55e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc152652g00001 DUF702 1.1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152652g00001 - - ahf:112720334 540.036