Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152646g00001 ATGCATCATCATTGTACTCCCCATATTGTTCATAGAGATGTCGGCAACAACAATATTTTGCTGAATCCAAAGTTAGAAGCTTGTGTATCAGATTTCGGCATAGCAAGACTTCTTGATCTTAATTCATCTAATCAAACTCTTCTAGTTGGCACCTATGATATGTTGCTCCAG 171 0.3743 MHHHCTPHIVHRDVGNNNILLNPKLEACVSDFGIARLLDLNSSNQTLLVGTYDMLLQ 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152646g00001 57 Gene3D Transferase(Phosphotransferase) domain 1 1 55 - -
Stsc152646g00001 57 Pfam Protein tyrosine and serine/threonine kinase 7 42 IPR001245 GO:0004672|GO:0006468
Stsc152646g00001 57 ProSiteProfiles Protein kinase domain profile. 1 57 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152646g00001 57 PANTHER LEUCINE RICH REPEAT KINASE 2 1 52 - -
Stsc152646g00001 57 SUPERFAMILY Protein kinase-like (PK-like) 1 52 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152646g00001 Stsc-Chr152646 5101 5271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152646g00001 1 55 Receptor kinase-like Gene Family AT2G35620 51.786 8.98e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc152646g00001 PK_Tyr_Ser-Thr 1.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152646g00001 - - aip:110269304 92.4337