Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152596g00001 GCAAAAAGAGTGCTGAAAAGCCTCAGAATCAGGGTTAATAATGTGGAGTACAAAATCAGTGGACTCAGTGAGAATCCCTGCAGGTCTCAAATGTTTTCATTGAAACATGGTAGGGACGAAAATGGTGAACCAAGGACAATTGAAATCACAGTTTATGATTACTTTAAACGCCATAAGAAAATTGAATTGCGCCATGCTGATTTTCCATGCGTCAATGTTGGCAAGCCACGGCGCCCAACTTATTTTCCAGTGGAGCTATGCACCTTGATCTCATTGCAGAGGTACACCAAGGCTTTGACAAATTTGCAAAGGGCTCAGTTAGTTGAGAAGTCAAGGCAAAAGCCTATTGAGAGGAAAGAAGCTTTGGCTGGTTCCTTAAGAAACAGCAGATATGGCAATGAGCCTATGCTTCGCTCTGCTGGGATTACCATTGAATCTGATTTTACTCGTGTTGAAGGCCGAATTCTGCAACCTCCAAAACTTGTAGTTGGAAATGGGGAGGACTTCATTCCAAGGGGAGGGCGCTGGAATTTCAACAATAAGCAACTAGTTAGTCCTGTGAGTCTTGAGCGTTGGGCTGTTGTAAACTTCTCAGCTCGCTGTGACACACAATTTCTGTGCAATACCATCAAGAAATGTGCTGGAATGAAGGGAATTCGCATAAAGCCTCCATTTCAAGTATTCGAAGAGGATGGTCGTGCAAAACGTGATCCGGCGCCTGTAAGGGTCGAAAAGATGTATCAATTTGTAAAGTCCAAGTTGCCTGGCCCCCCTCAGCTTCTGTTGTGCATTCTTCCAGAGAGAAAGAATTCTGAAATTTATGGACCTTGGAAAAGAAGAAATCTTGCTGATGAAGGTGTTGCAACACAGTGTATTGCACCAACAAAAATTAATGATCAGTATATTACTAACGTTCTGCTGAAAATTAATGCAAAGCTTGGTGGAATGAATTCCTTGCTGTCAATGGAGCGTGCTCCTTCCATACCTTTACTTCATAATCAAGCTACCTTAATTCTTGGTATGGATGTTTCTCATGGAGCTCCAGGCAGATCAGATGCGCCATCTATTGCTGCGGTTGTGAGTTCAAGGTCTTGGCCTTCAATTTCCTGCTACAGAGCCGCAGTTCGGACTCAGTCACCAAGAGTTGAGATGATTCAGTCTTTATTTAAGCCAGTTCCTTCTGATACTGGTAATAAAGATGAAGGTATCATCAGGGAGCTGATTATGGACTTCTATGAAACTTCAAAACAAAGGAAGCCTCAGCAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTAGTTCCAATCATAGAGGCATGCAAATATCTTGATGAGAAGTGGTCTCCGAAGTTCACTTTTATTGTTGCTCAGAAGAACCATCACACTAAGTTCTTCAAGGACAATGCTCCAGATAATGTTCCACCAGGAACTGTTGTTGACAGCCAAATCTGTCATCCCAAGAACAATGACTTTTACATGTGTGCTCATGCTGGGATGATTGGAACAACTCGACCTACTCATTACCAAGTTTTGCATGATGAAATTGGATTCTCTGCTGATGATTTGCAAGAATTAGTTCATTCTCTTTCTTATGTTTACCAGAGAAGCACAACAGCCATATCAATAGTTGCTCCAATTTGCTATGCTCACTTAGCAGCTGCCCAAATGGGACAGTTTATCAAGTATGGTGAAGTGTCTGAGACTTCATCCAGCCATGGCGGAACTACAATTCCTGGTGCAGTTCATGTACCTCAGTTACCCCTTCTTCACAAAGATGTCGC 1811 0.4235 AKRVLKSLRIRVNNVEYKISGLSENPCRSQMFSLKHGRDENGEPRTIEITVYDYFKRHKKIELRHADFPCVNVGKPRRPTYFPVELCTLISLQRYTKALTNLQRAQLVEKSRQKPIERKEALAGSLRNSRYGNEPMLRSAGITIESDFTRVEGRILQPPKLVVGNGEDFIPRGGRWNFNNKQLVSPVSLERWAVVNFSARCDTQFLCNTIKKCAGMKGIRIKPPFQVFEEDGRAKRDPAPVRVEKMYQFVKSKLPGPPQLLLCILPERKNSEIYGPWKRRNLADEGVATQCIAPTKINDQYITNVLLKINAKLGGMNSLLSMERAPSIPLLHNQATLILGMDVSHGAPGRSDAPSIAAVVSSRSWPSISCYRAAVRTQSPRVEMIQSLFKPVPSDTGNKDEGIIRELIMDFYETSKQRKPQQIIIFRDGVSESQFIKVLNEELVPIIEACKYLDEKWSPKFTFIVAQKNHHTKFFKDNAPDNVPPGTVVDSQICHPKNNDFYMCAHAGMIGTTRPTHYQVLHDEIGFSADDLQELVHSLSYVYQRSTTAISIVAPICYAHLAAAQMGQFIKYGEVSETSSSHGGTTIPGAVHVPQLPLLHKDVA 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152596g00001 604 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 572 - -
Stsc152596g00001 604 Gene3D paz domain 1 95 - -
Stsc152596g00001 604 Pfam Piwi domain 261 571 IPR003165 GO:0003676
Stsc152596g00001 604 CDD Piwi_ago-like 135 565 IPR045246 -
Stsc152596g00001 604 Gene3D - 155 321 - -
Stsc152596g00001 604 Gene3D - 328 604 IPR036397 GO:0003676
Stsc152596g00001 604 ProSiteProfiles Piwi domain profile. 260 571 IPR003165 GO:0003676
Stsc152596g00001 604 CDD PAZ_argonaute_like 1 90 - -
Stsc152596g00001 604 Pfam Argonaute linker 2 domain 117 161 IPR032472 -
Stsc152596g00001 604 SUPERFAMILY Ribonuclease H-like 244 569 IPR012337 -
Stsc152596g00001 604 ProSiteProfiles PAZ domain profile. 17 91 IPR003100 GO:0005515
Stsc152596g00001 604 SUPERFAMILY PAZ domain 2 131 IPR036085 GO:0005515
Stsc152596g00001 604 FunFam Protein argonaute 3 328 604 - -
Stsc152596g00001 604 Pfam PAZ domain 10 107 IPR003100 GO:0005515
Stsc152596g00001 604 SMART Piwi_a_2 260 571 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152596g00001 Stsc-Chr152596 6684 10076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152596g00001 2 603 Eukaryotic Initiation Factors Gene Family AT5G43810 36.709 6.00e-123 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152596g00001 K11593 - pop:7486850 904.049