Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152591g00001 ATGGAACATAAAAAACCATGTGTGTTGATTGTGTGGAAAGAGTTCAAGCCACACATTCTAATGTTCTTGGCCCAGGTGGGTTGTGCCTTGGTATATTTCATCACTGAAGCTTCCTTCAACCATGGAATGAGTCCTTTTCTCTATGTAACATATCGCTATTTTGTGGCTGCTCTTTTCATGTTCCCTTTTGCATATTTTCTCGAGAGAAAACAAAGACCAAAGCTCACGTTTGCTCTGTTCATGGAAATTTTTGTGCTTTCCTTGGTCGGGATTAGTGCTCCTATCAACATGTACTTTGCAAGCTTGCAGTACACATCTCCAACCCTAGTTGCTTCAATGTTCAACATAGTAGCTTCCCTGACCTTCATTATTGCGGTAGCACTGAGGTATGAAGCTCTTGATCTTGGAGATGCTCATGGAATAGGAAAAGTTGTAGGGACATTGATATCGTTAGGAGGAGTAATGATGATGACGCTGTACAAAGGACCAAAGGTGAAGAATTTGTGGGGTCCACTAATCCATATTCAAGGGAGAAGTGGTGGAAGCCAAGAGAATTGGTTAAAGGGTTCAGTTCTTGCGGTTACAAGTTGCGTTTCGTTATCTGTCTGGTATATTATGCAGGCATCCACTTTGAAAAGGTACCCAGCTCAACTATCCTTAACTTCGTGGATGTGCTTTGTTGGAGCAATGCAATCAGCTATTTTCACAGCAATTGTAGAACATAGGCATCCTTCAGCTTGGCTCATAGGCTTCAACATTGATTTGTGGTCCACATTATATGGTGGAATTGTGGTGTCTGGATTGGTAATATATGTTTCGTTATGGTGCACTGAGAAAAAAGGGCCAGTCTTTGTCACAATGACTACCCCACTTTGTACCGTTGTAGTGGCAATTCTTGCATACTTCGTCTTTGGCGAGAAACTTTATGTGGGCAGCATCATAGGGGCATGTTTTGTGATCGTTGGTCTGTATTTGCTGTTGTGGGGTAAAGAAGCTGATAACCAAGAAGAAGTTGACACTACTATCATCACCAAAGATGCATCAACAAAGTGCAATGTTGTTGAAGACCCATTAGAATGCAGAGTTTGA 1089 0.4178 MEHKKPCVLIVWKEFKPHILMFLAQVGCALVYFITEASFNHGMSPFLYVTYRYFVAALFMFPFAYFLERKQRPKLTFALFMEIFVLSLVGISAPINMYFASLQYTSPTLVASMFNIVASLTFIIAVALRYEALDLGDAHGIGKVVGTLISLGGVMMMTLYKGPKVKNLWGPLIHIQGRSGGSQENWLKGSVLAVTSCVSLSVWYIMQASTLKRYPAQLSLTSWMCFVGAMQSAIFTAIVEHRHPSAWLIGFNIDLWSTLYGGIVVSGLVIYVSLWCTEKKGPVFVTMTTPLCTVVVAILAYFVFGEKLYVGSIIGACFVIVGLYLLLWGKEADNQEEVDTTIITKDASTKCNVVEDPLECRV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152591g00001 362 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020
Stsc152591g00001 362 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Stsc152591g00001 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Stsc152591g00001 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
Stsc152591g00001 362 PANTHER WAT1-RELATED PROTEIN 17 334 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152591g00001 Stsc-Chr152591 5973 9522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152591g00001 16 356 Nodulin-like Gene Family AT5G07050 40.171 2.39e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152591g00001 - - gmx:100527877 504.982