Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152589g00002 GCAGTTTGCTGGGGTGCTGGTGAAGCTGTAAAATTAGAAGAGATTCAAGTTGATCCACCAAAAGCAAATGAAGTTCGAGTTAAGATGCTTTGTGCTAGCATCTGCCACTCTGATATCACCAGCATCCAAGGATTATTACCATATTTTCATTATCCACTAGCACTTGGTCACGAAGGAGTTGGGGTTGTGGAAACAGTTGGAGATGGAGTCACAAATTTCAAAGAAGGGGATATGGTGATTCCAACATACATAGGAGAATGCAAAGAATGTGAGCATTGCAATTCAGGAAAATCAAACATGTGCTTGACATATCCTATGAGGTTCACTGGCTTGATGCCAGATAACACTTCAAGGATGTCCTGCAGAGGCAACACTTTATATTACTGTTTAACTTTCGGCACGTGGTCCGAGTACACGGTTATCGATGTTAACTACCTTGTTAAGGTTGATCCGAGCATGAATCCAGCCCATGCCAGCTTCATCTCGTGTGGATTCTCAACTGGCTATGGAGCTGCATGGAAGGAAGCCAGAGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCTATAAGTGGAGCAAAAATGATGGGGGCAAGTAAGATAATAGGGATTGACACAAATGAGATGAAGAGGGAAAAAGGAGAAGCATTTGGAATGACTCATTTTATAAATCCTAATGATTCTGAAAAATCTCCTTCAACATTGGTGAAAGGATTGAGTAATGGATTTGGTGTGGATTGTTCATTTGAGTGCACTGGAGTTGGCCCTTTGCTCACTGAATCCTTAGAAGCCACAAAACTGGGAAGTGGTAAGGCAATATCAATTGGAGCAGGGAATGAAGTTACTATACCTTTTGGTCATGCTTCACTTCTTTTTGGAAGAACTTTGAAAGGTTCTATTTTTGGAGGACTTAAACCCATTTCAGATCTTTCTATTATGGCTGACAAGTGCCAGAAACAGGAGTTTCCTCTTGAAGAATTACACACCCATGAGGTCCAATTGGAAGATATAAACAAAGCATTTGAGATGTTGAAACAGCCCAGTTGTGTGAAAATTGTCATCAAGATGTGA 1092 0.4121 AVCWGAGEAVKLEEIQVDPPKANEVRVKMLCASICHSDITSIQGLLPYFHYPLALGHEGVGVVETVGDGVTNFKEGDMVIPTYIGECKECEHCNSGKSNMCLTYPMRFTGLMPDNTSRMSCRGNTLYYCLTFGTWSEYTVIDVNYLVKVDPSMNPAHASFISCGFSTGYGAAWKEARVESGSSVAVFGLGAVGLGAISGAKMMGASKIIGIDTNEMKREKGEAFGMTHFINPNDSEKSPSTLVKGLSNGFGVDCSFECTGVGPLLTESLEATKLGSGKAISIGAGNEVTIPFGHASLLFGRTLKGSIFGGLKPISDLSIMADKCQKQEFPLEELHTHEVQLEDINKAFEMLKQPSCVKIVIKM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152589g00002 363 Gene3D - 2 358 - -
Stsc152589g00002 363 FunFam alcohol dehydrogenase 1-like isoform X1 6 167 - -
Stsc152589g00002 363 Gene3D - 168 306 - -
Stsc152589g00002 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 324 IPR036291 -
Stsc152589g00002 363 SUPERFAMILY GroES-like 1 178 IPR011032 -
Stsc152589g00002 363 FunFam S-(hydroxymethyl)glutathione dehydrogenase 168 306 - -
Stsc152589g00002 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 56 70 IPR002328 GO:0008270|GO:0016491
Stsc152589g00002 363 Pfam Alcohol dehydrogenase GroES-like domain 23 149 IPR013154 -
Stsc152589g00002 363 CDD liver_alcohol_DH_like 1 362 - -
Stsc152589g00002 363 SMART PKS_ER_names_mod 5 361 IPR020843 GO:0016491
Stsc152589g00002 363 PANTHER ALCOHOL DEHYDROGENASE 1 355 - -
Stsc152589g00002 363 Pfam Zinc-binding dehydrogenase 191 310 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152589g00002 Stsc-Chr152589 9970 12060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152589g00002 23 353 Monolignol Biosynthesis Gene Families AT2G21730 27.976 4.96e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152589g00002 K00121 - gmx:100798341 536.954