Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152589g00001 ATGGCAAGCAACTCACAAGTTATTACATGCAAAGGAGTAGTGTGCTGGGGTGGTGGAGAGCCTGTAAGGTTAGAAGAGATTCAAGTTGATCCACCAAACGCAACCGAAATTCGTGTTAAGATGCTTTGTTCTAGCATCTGCCACACTGATATCAAAAGAATCCGAGGATCCCCACTAGTGAAATATCCTCTTGCTGTTGGACATGAAGGAGTTGGTGTTGTAGAGAGTGTTGGAGAGGAAGTAAAAAATCTAAAAGGAGGGGATGTGGTGATTCCAACCTTCATAGGAGAGTGCAAAGAATGTGAGAATTGCATTTCAGGAAAAACCAATTTGTGCCTGACATATCCTGTAACATACAATGGATTGATGCGAGACAACACTTCAAGGATGTCCTGTAAAGGAAAAAAGTTACACCATATTTTCAGTTGTTCCACTTGGTCAGAGTACATGGTTGTTGATGCCAACTATGCTCTTAAAGTTGATCCAAGCATTGACCTAGCACATGCCAGTTTCATCTCATGTGGCTTTTCAACTGGTTATGGAGCTGCTTGGAAGGAAGCTAAGGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTTGGATTAGGGGCCGTAAGTGGAGCAAAAATGATGGGAGCAACAAAGATAATAGGGATTGACAAAAATGATATGAAAAGAGAAAAAGGAGAAATTTTTGGAATGACTCATTTTATAAATCCTGGTGGTTCCGATATGCCTCCTTCAAAATTGGTGAAAGAATTGAGTGATGGAAGAATAGGCGTGGATTATTCTTTTGAATGCACTGGAATTAGCCATTTGATTAATGAATCCTTACAAGCCACAAAAGTGGGAACAGGTAAAACAATTGTAATTGGTGCACCAACTGAACCAATTGAGCCATTTGGTTTCGGTTCAATCCTTCAAGGCAAGACTTTGAAAGGTTCTGTTTTTGGAGGGTTAAAAGCAAATTCAGATCTTTCCATTATAGCTGACAAATGCCAGAAAAGGGAATTTCCTCTAGAAGAATTATACACTCATGAAGTTCAATTGGCAGATATACACCAAGCATTTGAGCTTTTGAAACAGCCCAATTGTGTGAAAGTTGTCATCAAGATATGA 1128 0.398 MASNSQVITCKGVVCWGGGEPVRLEEIQVDPPNATEIRVKMLCSSICHTDIKRIRGSPLVKYPLAVGHEGVGVVESVGEEVKNLKGGDVVIPTFIGECKECENCISGKTNLCLTYPVTYNGLMRDNTSRMSCKGKKLHHIFSCSTWSEYMVVDANYALKVDPSIDLAHASFISCGFSTGYGAAWKEAKVESGSSVAVFGLGAVGLGAVSGAKMMGATKIIGIDKNDMKREKGEIFGMTHFINPGGSDMPPSKLVKELSDGRIGVDYSFECTGISHLINESLQATKVGTGKTIVIGAPTEPIEPFGFGSILQGKTLKGSVFGGLKANSDLSIIADKCQKREFPLEELYTHEVQLADIHQAFELLKQPNCVKVVIKI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152589g00001 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Stsc152589g00001 375 SUPERFAMILY GroES-like 4 190 IPR011032 -
Stsc152589g00001 375 PANTHER ALCOHOL DEHYDROGENASE 6 367 - -
Stsc152589g00001 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Stsc152589g00001 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 334 IPR036291 -
Stsc152589g00001 375 Gene3D - 179 318 - -
Stsc152589g00001 375 Gene3D - 14 370 - -
Stsc152589g00001 375 Pfam Zinc-binding dehydrogenase 202 323 IPR013149 -
Stsc152589g00001 375 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Stsc152589g00001 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 318 - -
Stsc152589g00001 375 CDD liver_alcohol_DH_like 8 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152589g00001 Stsc-Chr152589 3179 6460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152589g00001 36 335 Monolignol Biosynthesis Gene Families AT4G37990 28.053 4.56e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152589g00001 K00121 - gmx:100798341 547.74