Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152563g00002 GGATGCTTGCTTGTGCGCCAATCCTATTTCCACAATGATCCAAAGAATTTTGCTGATGTAGGAGGGGGGGTTCTCGGTTGTCGAGGCTTCCATTCAAGTTTTAGAACTACTCAGAGTGGCCTGTCACTCAATATAGATGTTTCCACTACCATGATTATTACCCCTGGGCCTGTGGTGGACTTTTTAATTGCCAATCAGAATGTGAGAGATCCCTATTCACTTGACTGGGCTAAGGCCAAAAGGACACTTAAAAATCTGAGGATTAGAACTAGTCCCTCCAATCAGGAGTTCAAGATTACTGGTCTGAGTGAACTTCCATGCAAAGAGCAGACTTTTACACTAAAGACCAGAGGTGGAGCGGATGGTGAAGAAACAGAAGTGACTGTTTATGACTATTTTGTTAAACAACGCAATATAGAGCTCCGCTACTCAGGTGATCTTCCATGTATCAACGTGGGAAAGCCGAAACGTCCAACATATTTCCCCCTTGAGCTTTGCGATCTGGTGTCCCTGCAGCGGGCTATCATCTCTGTATTGCAGGCACTAAAAACCAGCAACTATGCTTCTGAACCAATGCTACGTAGCTGTGGTGTTCAAATAAGCAATAGCTTCACTCCAGTTGAAGGACGTGTTTTGCAAGCTCCAAGGCTGAAATTTGGGAATGGAGAAGATTTCAATCCTAGGAACGGAAGGTGGAATTTTAACAATAAGAAAATAGTCCAACCAACAAAGATTGAGAGATGGGCAGTGGTTAACTTCTCTGCTCGCTGTGATGTGAATGGGCTTGTCAGGGACCTGATTAAATGTGGAGGAATGAAAGGAATTATGGTTGAAGCACCATTTGATGTCTTTGAAGAACAAGAGCGGAAGAATTCTGAACTTTATGGTCCTTGGAAGAAGAAGAACCTTGCTGACTTTGGAATTGTTACTCAATGCATTGCTCCAACAAGGGTCAATGACCAATATTTGACCAATGTTTTGTTGAAAATAAATGCCAAGCTTGGTGGGTTGAATTCTATGCTAGGTGTGGAGCACTCCCCTTCTATTCCAATTGTTTCAAAATCTCCTACCCTAATACTTGGAATGGATGTGTCCCATGGCTCTCCGGGGCAATCCGATATTCCATCAATTGCTGCGGTGGTGAGCTCTAGAGAATGGCCACTGATATCGAAGTATAGGGCATGTGTTCGAACCCAGTCTCCCAAGGTTGAAATGATTGATAATTTATTTAAGAAAGTATCTGACAAAGATGATGAGGGAATTATCAGGGAACTTCTGATTGACTTCTATTCAAGTTCTGGAAAGAGGAAACCTGACAATATAATTATATTCAGGGATGGTGTCAGTGAATCTCAATTCAATCAAGTTTTGAACAAAGAACTTGATCAAATCATTCAGGCCTGCAAATTTCTGGATGAGAACTGGGATCCCAAGTTTTTGGTGATTGTTGCTCAAAAGAATCACCATACAAAGTTTTTCCAGCAGGGATCACCTGACAATGTTCCTCCTGGAACTGTTATTGATAACAAAATTTGTCACCCTCGGAACTATGATTTTTACATGTGTGCCCATGCTGGAATGATTGGTACTACCAGGCCTACTCACTACCATGTGCTGTTGGATGAGATTGGTTTCTCGCCCGATGATCTGCAGGAACTTGTTCATTCTCTTTCTTATGTGTATCAGAGGAGTACCACTGCCATCTCTGTTGTTGCTCCAATATGCTATGCTCACCTGGCTGCAACTCAGATGGGACAGTTTATGAAATACGAAGATAAATCTGAGACCTCATCAAGCCATGGTGGACTCACTGCTGCTGGAGCGGTTCCTGTCCCTCAGTTACCCAAGTTGCAAGACAATGTTTGCAACTCTATGTTCTTTTGTTAG 1887 0.4271 GCLLVRQSYFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRIRTSPSNQEFKITGLSELPCKEQTFTLKTRGGADGEETEVTVYDYFVKQRNIELRYSGDLPCINVGKPKRPTYFPLELCDLVSLQRAIISVLQALKTSNYASEPMLRSCGVQISNSFTPVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPTKIERWAVVNFSARCDVNGLVRDLIKCGGMKGIMVEAPFDVFEEQERKNSELYGPWKKKNLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSMLGVEHSPSIPIVSKSPTLILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKKVSDKDDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNKELDQIIQACKFLDENWDPKFLVIVAQKNHHTKFFQQGSPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTTRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKYEDKSETSSSHGGLTAAGAVPVPQLPKLQDNVCNSMFFC 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152563g00002 628 SMART Piwi_a_2 274 589 IPR003165 GO:0003676
Stsc152563g00002 628 SMART DUF1785_2 3 55 IPR014811 -
Stsc152563g00002 628 Pfam PAZ domain 59 183 IPR003100 GO:0005515
Stsc152563g00002 628 Coils Coil 454 474 - -
Stsc152563g00002 628 ProSiteProfiles PAZ domain profile. 80 170 IPR003100 GO:0005515
Stsc152563g00002 628 SMART PAZ_2_a_3 56 194 IPR003100 GO:0005515
Stsc152563g00002 628 Pfam Argonaute linker 1 domain 5 53 IPR014811 -
Stsc152563g00002 628 SUPERFAMILY Ribonuclease H-like 289 587 IPR012337 -
Stsc152563g00002 628 Gene3D paz domain 49 175 - -
Stsc152563g00002 628 FunFam Protein argonaute 7 50 174 - -
Stsc152563g00002 628 FunFam Protein argonaute 3 349 628 - -
Stsc152563g00002 628 Pfam Argonaute linker 2 domain 177 219 IPR032472 -
Stsc152563g00002 628 Gene3D - 211 287 - -
Stsc152563g00002 628 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 590 - -
Stsc152563g00002 628 CDD PAZ_argonaute_like 55 169 - -
Stsc152563g00002 628 SUPERFAMILY PAZ domain 50 178 IPR036085 GO:0005515
Stsc152563g00002 628 CDD Piwi_ago-like 191 583 IPR045246 -
Stsc152563g00002 628 ProSiteProfiles Piwi domain profile. 274 589 IPR003165 GO:0003676
Stsc152563g00002 628 Gene3D - 348 628 IPR036397 GO:0003676
Stsc152563g00002 628 Gene3D - 288 345 - -
Stsc152563g00002 628 Pfam Piwi domain 289 589 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152563g00002 Stsc-Chr152563 9575 14211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152563g00002 5 628 Eukaryotic Initiation Factors Gene Family AT1G48410 35.368 9.82e-131 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152563g00002 K11593 - gmx:100779439 1116.29