Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152528g00001 ATGATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGCTTTGGGATGAGTGCCACTTTCATTGTTTTTGTGTGCACCAGAATCATCTGTGGGAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACATAGAACAGCCAGAACATCATGGTAATGACGCCGAACCTGAGCCTGTTATGCTTGATGCCATCCCCACTTTGAAGTTCAATCAAGAGGCCTTCAGTTCTATTGAAGACACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTGCGCATCATGCCAAAATGCGGTCACACGTTCCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCGTTGAAAAACTCGTCTGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGACGAGTCGCACATAGCGGAAAGGAATCAGGATAGCGAGAGTCACGTCGAGCCCACCGCTAGCAACTCCTCACAACCACCAACTCCTGGAGAACCAGAAGCAAGACAATGA 576 0.4705 MMGSGTNLVTTVIGFGMSATFIVFVCTRIICGRIRGSVESRMMYEIESRIDIEQPEHHGNDAEPEPVMLDAIPTLKFNQEAFSSIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHIAERNQDSESHVEPTASNSSQPPTPGEPEARQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152528g00001 191 PANTHER OS11G0150450 PROTEIN 1 176 - -
Stsc152528g00001 191 MobiDBLite consensus disorder prediction 147 191 - -
Stsc152528g00001 191 Pfam Ring finger domain 89 132 IPR001841 -
Stsc152528g00001 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Stsc152528g00001 191 MobiDBLite consensus disorder prediction 170 185 - -
Stsc152528g00001 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Stsc152528g00001 191 SMART ring_2 90 131 IPR001841 -
Stsc152528g00001 191 CDD RING-H2_EL5-like 89 132 - -
Stsc152528g00001 191 SUPERFAMILY RING/U-box 80 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152528g00001 Stsc-Chr152528 10918 12960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152528g00001 79 135 C3H Transcription Factor Family AT4G10160 56.140 1.28e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152528g00001 - - ccaj:109802319 348.206