Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152526g00001 ATGGTGAAGATAGCTGTTGGTTCTTTTGATGACTCTTTTAGCGTTACCTCTCTCAAGGCTTACTTGGCAGAGTTCATTGCCACTCTTATCTTCGTCTTTGCTGGCGTTGGTTCAGCCATAGCTTACAATGAGCTTACAGCAGATGCAGCTTTGGACGCACCAGGGCTGGTGGCGGTGGCAGTGGCCCACGCATTTGCACTGTTTGTGGGAGTGTCCATCGCGGCCAACATCTCAGGTGGCCACTTGAACCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATTACCCTCCTTACTGGTTTCTTCTATTGGATTGCCCAATTGCTTGGCTCCATTGTCGCATCTCTCCTCCTAAGTTATGTCACAGCTAAGAGCATTCCAACCCATGGTGTGGCTGGCATAAACGCTTTTGCTGGTGTGGTGTTCGAAATCGTTGTTACTTTTGGATTGGTGTACACTGTATACGCCACTGCAGCTGACCCCAAAAAGGGCTCAGTTGGCACCATTGCACCTATTGCTATTGGGTTCATTGTGGGTGCCAACATCCTAGCTGCTGGCCCATTCAGTGGTGGGTCAATGAACCCGGCCCGTTCATTTGGCCCAGCTGTTGTTAGTGGCAACTTCGCCGACAACTGGATCTACTGGGTTGGCCCATTGATCGGTGGGGGCTTGGCTGGGCTCATTTATGGTGATGTTTTCATTGGTTCCTATAGCCCTGCCCCAGCCACCGAAACTTACCCTTGA 747 0.51 MVKIAVGSFDDSFSVTSLKAYLAEFIATLIFVFAGVGSAIAYNELTADAALDAPGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITLLTGFFYWIAQLLGSIVASLLLSYVTAKSIPTHGVAGINAFAGVVFEIVVTFGLVYTVYATAADPKKGSVGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYSPAPATETYP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152526g00001 248 PANTHER AQUAPORIN-8 4 236 IPR034294 -
Stsc152526g00001 248 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
Stsc152526g00001 248 FunFam Probable aquaporin TIP1-1 2 246 - -
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 Pfam Major intrinsic protein 14 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 CDD MIP 19 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc152526g00001 248 SUPERFAMILY Aquaporin-like 14 238 IPR023271 -
Stsc152526g00001 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Stsc152526g00001 248 NCBIfam MIP family channel protein 23 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152526g00001 Stsc-Chr152526 4958 6781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152526g00001 1 245 Major Intrinsic Protein MIP AT5G47450 81.377 6.53e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152526g00001 K09873 - gmx:100527333 406.757