Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152511g00001 ATGGGGTGCTCTTTACTCATGATAACGCTGACCACTCTTCTTGTTGGAGCAGTTACTGTTGCATCTTCTTCTTCTCCTTTTGTGCAGCAAAAGCTAGATAAGGTTGTGAAGCTCCCAGGTCAGTCTTTTGATATCAAGTTCGATCACTATTCTGGCTATGTCACTGTTAATGATCAAGCTGGAAGGGCCCTCTTTTACTGGTTCATGGAAGCTGATCAGGATCCTCAAACCAAACCCCTTCTGTTATGGCTCAATGGAGGGCCTGGATGTTCATCCATTGCTTATGGTGAGGCAGAAGAAATTGGCCCCTTTCATATAAACCCAGATGCAAAGACACTTTATCTCAATCCTTACTCTTGGAACCAAGTTGCCAATGTTCTTTTTCTTGATTCTCCTGTTGGAGTTGGATTTTCATATTCAAACACTTCATCTGACATTCTTAACAATGGTGACAAGAGGACCGCTGAGGACTCTCTCACATTCTTATTGAAGTGGTTTGAGCGTTTCCCTCAATATAAAGGAAGGGACTTCTTTATTGTTGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGCTATTGTGAAGTACAACTCAGAAACAAAGAAAAATGCTATAAATCTGAAAGGATACATGGTTGGAAATGCTCTTACTGATGATTTCCATGACCATTTAGGGGTTGCTCAATTTTTGTGGACAAGTGGTTTGATTTCAGATCAAACATACAAACTATTGAACCAATGTGATGCCGAGTCGTTCATACATCCCTCAAATTCTTGCGGTCAGGTTTTTGATAATGCTGATGCAGAGCTTGGCAACATTGACCCTTACAGTATCTTTACTCCTCTGTGCCCTGGTAATGTTAGCCAGACAAAGCAACTTCTAAGAAGAAAGCATAGATTTGGTAGACTCACTGAAGCGTATGATCCTTGCACTGAGAAGCACTCTACCGCATACTTCAATCTACCTGAGGTCCAAAAGGCACTTCATGTTGATCAAGATCACAAGCCCAGTAAATGGGAAACCTGCAGTGAAGCAGTAGGTATCAACTGGAAGGACTCTCCAAGTACAGTGCTCGATGTTTATCATGAACTTATTGGTTCAGGACTGAGGATATGGATGTTCAGTGGTGACACAGATTCATTAATTCCAGTGACATCTACTCGGTATAGTATAGATGCTCTTAAGCTTCCCACAGTTAGCCCCTGGCGTCCATGGTATGACGAAGGGCAGGTGGGAGGGTGGACACAAGAATATGAAGGACTCACCTTTGTGGCAGTAAGGGGAGCAGGACATGAAGTTCCTTTGCATAGACCAAAACTAGCTCTTTCACTCTTCAAAGCCTTCATAGCTGGAACCTCCATGCCCACTCTTGAGCTAGTCAGTGACTCCTGA 1401 0.4311 MGCSLLMITLTTLLVGAVTVASSSSPFVQQKLDKVVKLPGQSFDIKFDHYSGYVTVNDQAGRALFYWFMEADQDPQTKPLLLWLNGGPGCSSIAYGEAEEIGPFHINPDAKTLYLNPYSWNQVANVLFLDSPVGVGFSYSNTSSDILNNGDKRTAEDSLTFLLKWFERFPQYKGRDFFIVGESYAGHYVPQLSQAIVKYNSETKKNAINLKGYMVGNALTDDFHDHLGVAQFLWTSGLISDQTYKLLNQCDAESFIHPSNSCGQVFDNADAELGNIDPYSIFTPLCPGNVSQTKQLLRRKHRFGRLTEAYDPCTEKHSTAYFNLPEVQKALHVDQDHKPSKWETCSEAVGINWKDSPSTVLDVYHELIGSGLRIWMFSGDTDSLIPVTSTRYSIDALKLPTVSPWRPWYDEGQVGGWTQEYEGLTFVAVRGAGHEVPLHRPKLALSLFKAFIAGTSMPTLELVSDS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152511g00001 466 Pfam Serine carboxypeptidase 39 453 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Stsc152511g00001 466 Gene3D - 360 454 - -
Stsc152511g00001 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Stsc152511g00001 466 Gene3D - 313 349 - -
Stsc152511g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 441 IPR001563 GO:0004185|GO:0006508
Stsc152511g00001 466 SUPERFAMILY alpha/beta-Hydrolases 34 457 IPR029058 -
Stsc152511g00001 466 FunFam Carboxypeptidase 30 288 - -
Stsc152511g00001 466 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Stsc152511g00001 466 FunFam Carboxypeptidase 360 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152511g00001 Stsc-Chr152511 5069 8218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152511g00001 323 457 Calmodulin-binding Proteins AT2G22960 26.471 2.52e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152511g00001 K16297 - cave:132184079 743.036