Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152500g00003 ATGTTGTTTGGAGAATACTGCAGTAGAGGTTTGGGTGCAGTAAGAGACCTTAAGATGGGGGAACTGATTCTCAGAGTTCCGAAATCTGCTTTGATGACAAGTGACAGTGTTATGCAAGATACAAAGCTCTCTGATGCTCTCAATAGGCACCCTTCTCTTTGTTCTACCCAGATATTGAATGCTTGTTTGTTGTATGAAATTGGAAAAGGAAAGGCTTCTAGGTGGCATCCTTACCTCATGCATTTACCGAAGAGTTATGACATCCTAGCCATGTTCGGTGAATTCGAGAAAACTGCTCTGCAAGTGGATGAGGCTATATGGGTCACTGAAATAGCCGTGCAAAAAACTAAATCAGAGTGGAAGCAAGCTCGTGCTTTGATGGAAGATCTCAAATTTAAGCCCCAGCTTCTAACATTTAAGGCTTGGGTGTGGGCTTCTGCAACGATATCATCGCGGACGTTACATATACCGTGGGATTCAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTACGATGCACCTGGAAAGGAGCCATCTGACATTGAGGATCTAGGGAATTTGCTTTCTAACACTTCGATCCATGATGGTTCCTTATCAAATGAAGACAACACTACAATTGCAGATGTAGAGCAGCTTGATTCTGAGTATCAGAGGTTAACAGATGGGGGATTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTAGGGCAAATTACAAAAAAGGAGATCAGGTTCTGTTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGTTTTATCCTACAAGAAAATCCAAATGATAAAGTTTTTATTCCTTTGGAACCTGCTGTGTATTCTTCTACTTCTTGGTCTAGGGAATCATTGTACATCCATTACAATGGGAAGCCTTCCTTTGCACTACTGGCTGCATTGCGGTTGTGGGCGACCCCTCAAATCAAGAGGAGGTCTGTTGCACATCTTGTTTATTCTGGCTCCAAAATCTCTGCAGACAATGAAATTTTCGTCATGAAATGGCTTTCGAATACTTGCCATGGTGTCTTGAAGAATTTGCCAACATCCATCGAAGATGACACCTTGCTCCTGAGTTCTATGGATAATAGTCAAGATTTTTGTACATTTGTGGAGGTTACAAAACTCCTGTCTTTCAGGGATGAGGTTGATACCTTCTTAGAAGCTCATAATATGAAGGATAAGTGTAGTGATAGCAATGTAGTTTTGTCTGGAAAAACAAGAAAGACTATGGATAAGTGGAAGTTGGCTATTCAATGGAGAATCAATTATAAGAAAGTCCTTCATGATTGTATCTCTTATTGTAGTTTAATATTAGATTCTCTCATAAAATAG 1362 0.4023 MLFGEYCSRGLGAVRDLKMGELILRVPKSALMTSDSVMQDTKLSDALNRHPSLCSTQILNACLLYEIGKGKASRWHPYLMHLPKSYDILAMFGEFEKTALQVDEAIWVTEIAVQKTKSEWKQARALMEDLKFKPQLLTFKAWVWASATISSRTLHIPWDSAGCLCPVGDLFNYDAPGKEPSDIEDLGNLLSNTSIHDGSLSNEDNTTIADVEQLDSEYQRLTDGGFEEDANAYCFYARANYKKGDQVLLCYGTYTNLELLEHYGFILQENPNDKVFIPLEPAVYSSTSWSRESLYIHYNGKPSFALLAALRLWATPQIKRRSVAHLVYSGSKISADNEIFVMKWLSNTCHGVLKNLPTSIEDDTLLLSSMDNSQDFCTFVEVTKLLSFRDEVDTFLEAHNMKDKCSDSNVVLSGKTRKTMDKWKLAIQWRINYKKVLHDCISYCSLILDSLIK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152500g00003 453 Pfam SET domain 9 252 IPR001214 GO:0005515
Stsc152500g00003 453 Gene3D set domain protein methyltransferase, domain 1 3 266 - -
Stsc152500g00003 453 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 262 443 IPR036464 -
Stsc152500g00003 453 SUPERFAMILY SET domain 8 270 IPR046341 -
Stsc152500g00003 453 CDD SET_LSMT 9 266 - -
Stsc152500g00003 453 ProSiteProfiles SET domain profile. 1 252 IPR001214 GO:0005515
Stsc152500g00003 453 Pfam Rubisco LSMT substrate-binding 301 437 IPR015353 -
Stsc152500g00003 453 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 9 385 - -
Stsc152500g00003 453 Gene3D - 282 452 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152500g00003 Stsc-Chr152500 6703 9302 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc152500g00003 SET 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152500g00003 - - ahf:112702602 771.155