Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152500g00001 ATGGAGGAAGAGGATGAACATGGAAGCATTGAAGGCTTACTAACATGGGCATCACAGATTGGAATATCGGATGCACCAACAACCACCGACCAACCTCGTAACTCCCTTGCTCTCGGTTCTTCTCTCTGTGTCTCTCACTTTCCTCACACTGGAGGTAGAGGTTTGGGTGCAGTAAGAGACCTTAAGATGGGGGAACTGATTCTCAGAGTTCCGAAATCTGCTTTGATGACAAGTGACAGTGTTATGCAAGATACAAAGCTCTCTGATGCTCTCAATAGGCACCCTTCTCTTTGTTCTACCCAGATATTGAATGCTTGTTTGTTGTATGAAATTGGAAAAGGAAAGGCTTCTAGGTGGCATCCTTACCTCATGCATTTACCGAAGAGTTATGACATCCTAGCCATGTTCGGTGAATTCGAGAAAACTGCTCTGCAAGTGGATGAGGCTATATGGGTCACTGAAATAGCCGTGCAAAAAACTAAATCAGAGTGGAAGCAAGCTCGTGCTTTGATGGAAGATCTCAAATTTAAGCCCCAGCTTCTAACATTTAAGGCTTGGGTGTGGGCTTCTGCAACGATATCATCGCGGACGTTACATATACCGTGGGATTCAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTACGATGCACCTGGAAAGGAGCCATCTGACATTGAGGATCTAGGGAATTTGCTTTCTAACACTTCGATCCATGATGGTTCCTTATCAAATGAAGACAACACTACAATTGCAGATGTAGAGCAGCTTGATTCTGAGTATCAGAGGTTAACAGATGGGGGATTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTAGGGCAAATTACAAAAAAGGAGATCAGGTTCTGTTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGTTTTATCCTACAAGAAAATCCAAATGATAAAGTTTTTATTCCTTTGGAACCTGCTGTGTATTCTTCTACTTCTTGGTCTAGGGAATCATTGTACATCCATTACAATGGGAAGCCTTCCTTTGCACTACTGGCTGCATTGCGGTTGTGGGCGACCCCTCAAATCAAGAGGAGGTCTGTTGCACATCTTGTTTATTCTGGCTCCAAAATCTCTGCAGACAATGAAATTTTCGTCATGAAATGGCTTTCGAATACTTGCCATGGTGTCTTGAAGAATTTGCCAACATCCATCGAAGATGACACCTTGCTCCTGAGTTCTATGGATAATAGTCAAGATTTTTGTACATTTGTGGAGGTTACAAAACTCCTGTCTTTCAGGGATGAGGTTGATACCTTCTTAGAAGCTCATAATATGAAGGATAAGTGTAGTGATAGCAATGTAGTTTTGTCTGGAAAAACAAGAAAGACTATGGATAAGTGGAAGTTGGCTATTCAATGGAGAATCAATTATAAGAAAGTCCTTCATGATTGTATCTCTTATTGTAGTTTAATATTAGATTCTCTCATAAAATAG 1494 0.4116 MEEEDEHGSIEGLLTWASQIGISDAPTTTDQPRNSLALGSSLCVSHFPHTGGRGLGAVRDLKMGELILRVPKSALMTSDSVMQDTKLSDALNRHPSLCSTQILNACLLYEIGKGKASRWHPYLMHLPKSYDILAMFGEFEKTALQVDEAIWVTEIAVQKTKSEWKQARALMEDLKFKPQLLTFKAWVWASATISSRTLHIPWDSAGCLCPVGDLFNYDAPGKEPSDIEDLGNLLSNTSIHDGSLSNEDNTTIADVEQLDSEYQRLTDGGFEEDANAYCFYARANYKKGDQVLLCYGTYTNLELLEHYGFILQENPNDKVFIPLEPAVYSSTSWSRESLYIHYNGKPSFALLAALRLWATPQIKRRSVAHLVYSGSKISADNEIFVMKWLSNTCHGVLKNLPTSIEDDTLLLSSMDNSQDFCTFVEVTKLLSFRDEVDTFLEAHNMKDKCSDSNVVLSGKTRKTMDKWKLAIQWRINYKKVLHDCISYCSLILDSLIK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152500g00001 497 Gene3D set domain protein methyltransferase, domain 1 8 310 - -
Stsc152500g00001 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 10 429 - -
Stsc152500g00001 497 SUPERFAMILY SET domain 38 314 IPR046341 -
Stsc152500g00001 497 FunFam Protein SET DOMAIN GROUP 40 10 310 - -
Stsc152500g00001 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Stsc152500g00001 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Stsc152500g00001 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 487 IPR036464 -
Stsc152500g00001 497 CDD SET_LSMT 41 310 - -
Stsc152500g00001 497 Gene3D - 326 496 IPR036464 -
Stsc152500g00001 497 Pfam Rubisco LSMT substrate-binding 345 481 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152500g00001 Stsc-Chr152500 6365 9302 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc152500g00001 SET 7.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152500g00001 - - ahf:112702602 843.573