Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152488g00002 ATGTATAACATGGTTTTGGTTTCATCATCATCATCTCCTGTTATGTTTAGGGTGAAAAGGTGTCAACCAGAACTAGTGGCTCCGGCCACGCCCACTCCCCAAGAAGTTAAACTGCTATCAGACATAGATGATCAAGAAGCCCTACGTTCCCATGTTCCTAACATATACATATATCGTCACAAACCGTCGATGGAAGGAAAAGACCCTGTAAAGGTGATAAGAGATGCACTCTCAAGAACACTTGTGTTTTACTACCCATTTGCCGGCAGGCTTAGGGAAGGTCATGGCCGCAAGTTGATGGTGGATTGCACTGCAGAGGGTGTTTTGTTCATTGAGGCTGATGCTGACGTCACACTTGATCAACTTGGTGAAGCTCTTCAACCTCCATTCCCTTGCTCTAAAGAATTGCTTTACAATGTTCCTGGCTCGGATGGAATTGTCGGTTGTCCCCTCTTGCTCATACAGGTCACACGCTTTAAATGCGGTGGATTTACTTTGGGCATAAGAGTGAACCACACTATGTGTGATGGAACTGGTTTTACACAATTTACGATTGCTTTGGCTGAAATGGCTCGAGGTGCTCATCAACCATCCGTTCTACCAATATGGCAAAGGGAGCTTCTAAGTGCAAGAAACCCACCACGCATCACATGCAACCATCGAGAATTTGAGAAACCAAAAGATATTGAGGAATGGCAGACTATCATTGGCAGCATTGAAAAAATGATTGAACGATCTTTCTTCTTTGGACCCACTGAAATAGCTTCTCTTGGTAACTTAGTTATAAATAATCAACCTGGTGTATATACCAGATTTGAGCTCATCACTGCATGTCTCTGGCGTTGTCTTGCAAAAGCATTGCAACTACCACCAGAAAAACAAGTTCGCATGGGCTGTATCGTCAATGCACGTGCTAGATTTAACCCTCAGATTCCGATTGGTTATTATGGAAACGTTACAGCATTTCCTGTGGCAGTGAGTACCGTGGAGAAGCTTTGTGAACAACCATTTACATATGCCGTGGAGTTAATTAAAAAAGCCAAAGCGGAGGTAACAGAAGAATATATGCATTCTTTGGCAGATTTTTTGGTGATTAATGGACGGCCTTTATATACACTACCATGGTCTTTCATTTCGTCAAAGTTGTCGCGTATTGGGTTTAGAAAAGTGGATTTTGGGTGGGGCAATGCAGTGCATGCTGGCGTATCTGATGGGAATGGTGGCCAAATTTATGGGATCAATACTTTTGGAGAACTTCATCTCATGGATTATGAAAATTCAGATAATAGAAAAGAAGGTCTTTTACTTCCAATCTTATTGCCTGCCAATGCTATGGAGAGGTTTGCAAAAGAACTGGATGATATGCTTTGGAACCCAAATCAAGCTATCAAGAGTGCTAAATCCCAGACAATTCTCAAGTCTAGCATGTAA 1431 0.4235 MYNMVLVSSSSSPVMFRVKRCQPELVAPATPTPQEVKLLSDIDDQEALRSHVPNIYIYRHKPSMEGKDPVKVIRDALSRTLVFYYPFAGRLREGHGRKLMVDCTAEGVLFIEADADVTLDQLGEALQPPFPCSKELLYNVPGSDGIVGCPLLLIQVTRFKCGGFTLGIRVNHTMCDGTGFTQFTIALAEMARGAHQPSVLPIWQRELLSARNPPRITCNHREFEKPKDIEEWQTIIGSIEKMIERSFFFGPTEIASLGNLVINNQPGVYTRFELITACLWRCLAKALQLPPEKQVRMGCIVNARARFNPQIPIGYYGNVTAFPVAVSTVEKLCEQPFTYAVELIKKAKAEVTEEYMHSLADFLVINGRPLYTLPWSFISSKLSRIGFRKVDFGWGNAVHAGVSDGNGGQIYGINTFGELHLMDYENSDNRKEGLLLPILLPANAMERFAKELDDMLWNPNQAIKSAKSQTILKSSM 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152488g00002 476 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 24 453 - -
Stsc152488g00002 476 Pfam Transferase family 18 454 - -
Stsc152488g00002 476 Gene3D - 15 225 IPR023213 -
Stsc152488g00002 476 Gene3D - 228 452 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152488g00002 Stsc-Chr152488 11209 13184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152488g00002 25 401 Monolignol Biosynthesis Gene Families AT5G48930 32.071 1.34e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152488g00002 K19861 - gmx:100787907 543.117