Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152488g00001 ATGAAGAACATTTTCAAGAAGCTTCACAAAGGGACCAACCACGACGCTAACCGCTCCAATGATGCTTCTGTTTCAAACGCCTCGTCCTCATTCGCCGTCGATCACCGCGCAGTTCAGAATTCCGGTGCCTCGCCGGCCACTCCTTCTCCTCCTTCTATTTCATCGTCGCCGTCTCCTGTCGCCGCGTCGACGCCTTCTTCCGCTTCCACTGCGGAAGCTTCTGCGGCCAAACGGCAGGACTATTTTTCGTCGGAGGAAGATTTTCAGGTTCAGCTTGCGCTCGCCATAAGCGCTTCGTCCAATTCGGACTTCAGTGATGATCCTGAGAAGGATCAGATCCGTGCGGCGACGCTGCTGAGCTTGGGAGGACGTGGAATCGGTTCAACAAGGAACGATGGCTGTGTGGCGGAGGCGCTGTCGAGGCATTATTGGGAATACAACGTGCTTGACTATGAACAGAAAGTGGTAGATGGTTTTTATGATGTGTATGGGCTTTATACTGATTTAGCAATGCAAGGCAAGATGCCATCTCTAAGAGATCTTGAAGCAGAATCTGAAAGCTCTGGCTTCGAAGTTGTCATAGTTGATCGTAAAATTGATCATGCTCTTGCAGAGCTGTTGCAAATTGCACAATGTATTGCATTAGACTGCCCCATCACTGTGGTTGATATTTTGGTTCAAAGGATTGCTGAACTTGTTACAAGCCATATGGGTGGTCCTGTAAAGGATGCTAGTACTATATTGGCAAGATGGACAGAAAGTAGTACAGAGTTAAGAACATCTCTACACACAATCATGTTGCCTCTCGGGTCAATAAATATTGGGCTCTCCAGACATCGTGCTTTGCTTTTCAAGGTAATAGCTGACAATATCAATATGCCTTGTAAACTGGTTAAAGGCAGTCATTATACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTTGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCTGGCACACTTATCCCAACTGATATTTCAAATTTGAAGGATCCTTCCTTTAAGCCTTACAATCCCAAGGTCTTACCAAGTTTGCCTTCCACTAAGGAAATTGATTATCCTGACACGAGATCAATGTTATCTCATGGTGAAAGTAGCAGTCAAAATTTTGTTATGAGAAGTGGTTCGCCTCCACTGAATGAAAAATCATGTTTTGACAAGTCAGCTTCAAGCTTTGGTCTGAAAGGAGATGCTGGTGTTGGAACTTATAAAATGCCTAATTGTTTGATGTCTAACCAACCAGAAAATATTGCATCACTATCTGGTGCTTCTCTATACAAGGGGACCCATGGAAATGTGGCTGGTGATAGGACTAGATTAAATGTCAACATTGTGCCATATGGCCAGAATAGCACCGATGACTCTCAAAGCCTTTTTGCAGATCTTAATCCCTTCCAGATAAAAGGAATTGGCAAGACCTCTCTGCATAACAAACCAGGGGCAAATAAAACTCATGACCTTCAGAATACAAGAAACAATACTGTCACTGGTCGACCTCCTATGCCTCCAAAATGGACAAGTCGTTCTGCTTACAATGAAGTTCCTAGGAACATTAGTTGTGATCCTAATGAATATAACCAACCTTTATTAGCTTCCACTAGTTCTTCTAAGATTGGACTGAATGGTTCCAAAGCACCATACAGTTCAAACTTAAATAATAATAGAAATACCCAACAATTGGCTCAAGTCACTTGTTCAGTTTCACCATCTTATGCAGGTGAACTTAACATGGCTGAAGATCTAAACATTGATTGTAAAAAGGGGGATTTGGAATACTCTCCAAATGACAAGGTTGATGTGGTCAAAGAACATGAAAACATTGATAGTGGTCAACTGGAGCCAAGGAAGTTCACACATGACAGGTTCATGGGGAAAAATATAAAATTAAAGGGTTCAGAGAGTGGAAACTTGTCGGTTGATTCCATTACAAAAGGTGTTGATCGGATATTGGATGATGTAGATGTCAGTGAATGTGAGATTCCATGGGAGGATCTTGTTATTGGAGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCTTGCTGACTGGAATGGCACGGAGGTTGCTGTGAAAAAATTTTTGGAACAGGATTTTTCAGGTGATGCCTTGAATGAATTCAAAAGAGAAGTACGGATAATGCGCAGACTGCGTCATCCAAATGTTGTTCTTTTTATTGGTGCTGTTACTCGTCCTCCCAATCTTTCAATCATTACAGAGTTTCTTCCCAGAGGAAGCTTGTATCGAATAATTCATAATTCCAACTGTCAGATTGACGAGAAACAAAGGATTAAGATGGCTCTTGATGTGGCCAGAGGCATGAATTGCTTACATAGCAGCACGCCTACAATTGTTCACCGTGATCTCAAGTCTCCGAATCTTTTGGTGGATAAGAACTGGAATGTTAAGGTCTGTGATTTTGGGTTGTCACGCTTGAAACACAATACGTTCTTGTCATCCAAGTCAACTGGTGGAACGCCCGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACAGTCAAATGAGAAGTGTGACGTGTATAGTTTTGGGGTCATTCTATGGGAGCTTGCCACTCTGAGGTTGCCCTGGAGTGAACTGAATCCTATGCAAGTTGTTGGTGCTGTAGGATTCCAAAACCGCCGTCTTGATATCCCAAAGGAAATTGACCCTGTAGTTGCAAGAATAATATGGGAATGCTGGCAACAGGATCCAAATTTGCGTCCATCATTTGCACAGCTCACAGCGGCTTTAAAGCCCCTTCAGCGTCTAGTTACCCCATCCCAGCAAGACCATGTAGCTTCTCCAATACAAGATAATTCTGTAAATTCTAACCCATGA 2874 0.4301 MKNIFKKLHKGTNHDANRSNDASVSNASSSFAVDHRAVQNSGASPATPSPPSISSSPSPVAASTPSSASTAEASAAKRQDYFSSEEDFQVQLALAISASSNSDFSDDPEKDQIRAATLLSLGGRGIGSTRNDGCVAEALSRHYWEYNVLDYEQKVVDGFYDVYGLYTDLAMQGKMPSLRDLEAESESSGFEVVIVDRKIDHALAELLQIAQCIALDCPITVVDILVQRIAELVTSHMGGPVKDASTILARWTESSTELRTSLHTIMLPLGSINIGLSRHRALLFKVIADNINMPCKLVKGSHYTGVEDDAVNIIKFEDEREFLVDLMAAPGTLIPTDISNLKDPSFKPYNPKVLPSLPSTKEIDYPDTRSMLSHGESSSQNFVMRSGSPPLNEKSCFDKSASSFGLKGDAGVGTYKMPNCLMSNQPENIASLSGASLYKGTHGNVAGDRTRLNVNIVPYGQNSTDDSQSLFADLNPFQIKGIGKTSLHNKPGANKTHDLQNTRNNTVTGRPPMPPKWTSRSAYNEVPRNISCDPNEYNQPLLASTSSSKIGLNGSKAPYSSNLNNNRNTQQLAQVTCSVSPSYAGELNMAEDLNIDCKKGDLEYSPNDKVDVVKEHENIDSGQLEPRKFTHDRFMGKNIKLKGSESGNLSVDSITKGVDRILDDVDVSECEIPWEDLVIGERIGLGSYGEVYLADWNGTEVAVKKFLEQDFSGDALNEFKREVRIMRRLRHPNVVLFIGAVTRPPNLSIITEFLPRGSLYRIIHNSNCQIDEKQRIKMALDVARGMNCLHSSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEQSNEKCDVYSFGVILWELATLRLPWSELNPMQVVGAVGFQNRRLDIPKEIDPVVARIIWECWQQDPNLRPSFAQLTAALKPLQRLVTPSQQDHVASPIQDNSVNSNP 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152488g00001 957 FunFam Serine/threonine-protein kinase isoform 1 668 755 - -
Stsc152488g00001 957 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524
Stsc152488g00001 957 MobiDBLite consensus disorder prediction 482 518 - -
Stsc152488g00001 957 MobiDBLite consensus disorder prediction 489 512 - -
Stsc152488g00001 957 MobiDBLite consensus disorder prediction 17 49 - -
Stsc152488g00001 957 PRINTS Tyrosine kinase catalytic domain signature 856 878 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 PRINTS Tyrosine kinase catalytic domain signature 751 764 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 PRINTS Tyrosine kinase catalytic domain signature 837 847 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 PRINTS Tyrosine kinase catalytic domain signature 900 922 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 PRINTS Tyrosine kinase catalytic domain signature 790 808 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 SMART serkin_6 677 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152488g00001 957 Pfam Protein tyrosine and serine/threonine kinase 678 928 IPR001245 GO:0004672|GO:0006468
Stsc152488g00001 957 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 938 - -
Stsc152488g00001 957 Gene3D Phosphorylase Kinase; domain 1 670 754 - -
Stsc152488g00001 957 Gene3D Transferase(Phosphotransferase) domain 1 756 941 - -
Stsc152488g00001 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Stsc152488g00001 957 SUPERFAMILY Protein kinase-like (PK-like) 666 945 IPR011009 -
Stsc152488g00001 957 Pfam Ethylene-responsive protein kinase Le-CTR1 136 334 - -
Stsc152488g00001 957 ProSiteProfiles Protein kinase domain profile. 677 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152488g00001 957 CDD STKc_MAP3K-like 683 929 - -
Stsc152488g00001 957 FunFam PAS domain-containing protein tyrosine kinase family protein 755 946 - -
Stsc152488g00001 957 MobiDBLite consensus disorder prediction 1 72 - -
Stsc152488g00001 957 MobiDBLite consensus disorder prediction 56 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152488g00001 Stsc-Chr152488 1953 8904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152488g00001 1 913 MAP Kinase Kinase Kinase AT1G08720 54.839 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc152488g00001 PK_Tyr_Ser-Thr 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152488g00001 - - aprc:113870732 1266.14