Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152461g00001 ATGGATCATGGTCATGGAAGTCAACCCTCATCTTCAACCACCAACAAGGTTGAAAGAAGGCTCATTGAGAAGAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCATTGCCACTCCCGGATCAAGTGGATGAAGCTATAAACTACATAAAGAGCTTAGAGGATAAGGTGAAGATGGCGAAGGAGAAGAAAGAGGGCTTATTGGGAAGGAAAAGGACACGCGGCGGCCACGGCGATGGTAGTGGTTGCAGCAGAACCAAACCGCCACAGCTTGAGGTTCATGAAATGGATTCATGTCTTGAAATTGTAATGACATGTGGCTTAGAAAACCAGTTCATATTCTATGAGATTATTCGCATACTCAATGAAGAGAACATCGATGTTAAGACTTCTAATTCCACACTCGTTGGAGATTCCATGCTTCATATTATCCATGCTGAGATTCCACAGGTTTTGGTTCAATTTGGGGCGACTAAAGTAAGTGAGAGATTGAGAAGGTTTGTAAATGGATCAGCAAGTGATATTGAATTGCAACCAGAGTTTTGGGATTTTGAGATTGATACTGATATCTGGGGTTTCTGCTAG 624 0.4247 MDHGHGSQPSSSTTNKVERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKSLEDKVKMAKEKKEGLLGRKRTRGGHGDGSGCSRTKPPQLEVHEMDSCLEIVMTCGLENQFIFYEIIRILNEENIDVKTSNSTLVGDSMLHIIHAEIPQVLVQFGATKVSERLRRFVNGSASDIELQPEFWDFEIDTDIWGFC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152461g00001 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 82 IPR036638 GO:0046983
Stsc152461g00001 207 Coils Coil 56 83 - -
Stsc152461g00001 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Stsc152461g00001 207 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Stsc152461g00001 207 Gene3D - 5 87 IPR036638 GO:0046983
Stsc152461g00001 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 181 - -
Stsc152461g00001 207 SMART finulus 20 72 IPR011598 GO:0046983
Stsc152461g00001 207 MobiDBLite consensus disorder prediction 76 91 - -
Stsc152461g00001 207 FunFam Transcription factor bHLH162 5 91 - -
Stsc152461g00001 207 MobiDBLite consensus disorder prediction 76 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152461g00001 Stsc-Chr152461 12947 14528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152461g00001 8 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.979 9.28e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc152461g00001 HLH 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152461g00001 - - gmx:100817883 283.493