Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152441g00003 ATGATTGCTGTGAAAAAGCCACATGCCAAAATATACTCGGAAGCTACATATGTTAATGTCCAAAAGGATACTCGAGATGGGAGGAAAAATGGAACAAAATGCTGTCACAATGACAACTATACTAAGGGCTACCAACGAATTTCTAAAGTCGCATTGGGTGTTTGTGGGGTTGTTATAGTTCTACTTGTTGCGAGCTTTTATATGTATAGGAAGAGGAAGAAAACAATTCTTATTAAACTTCAGCAACGGTTTTTTCAACAAAATGGTGGCCTATTACTACAACAACAAATCGCATCTTACAAAGGATCAAACCAAACAACGCCAAAAATCTTCACTGTGGAAGAATTACAAGATGCCACCAACAACTTTGATGAAGCTAGGATCCTTGGCAAAGGTGGCCAGGGCACAGTTTACAAAGGAGTGTTAACGGATGATAATATTGTGGCAATTAAAAGGTCCAAACTCAACCATATAAGCCAAGTTGAACAGTTTATCAATGAAGTTGTTTTGCTTTCACAAATTAATCATAGGAATGTGGTTAAACTCTTAGGCTGTTGCTTAGAGACTGAAGTTCCATTACTTGTTTACGAGTACGTTTCAAACGGCACTGTTTATGATCATCTTCATCATGATCATGATTATAGTCAATCATTTCAGCTAGATTGGAAGGTGAGATTGCAAATAGCTACCGAAGCTGCTGGTGCTTTGGCTTACTTGCATTTTGCTGCTTCTATGCCTATCATTCATAGGGATGTTAAGATAAGTAACATATTGCTGGATCATAATTTGACTACAAAAGTCTCTGATTTTGGAACTTTAAGAATTATTTCTCTTGATCATACTCAATTAACCACTTTGATGCAGGGGACACTAGGGTATCTTGATCCTGAATACTTTCACACAAGCCATTTAACTGAGAAAAGTGATGTTTATAGTTTTGGAGTAGTTTTGGCTGAGTTACTCACAGGAAGAAAAGCGCTTTCTTTCGCTCTACCAGAAATGGATAGAAACCTTGCTTTGTACTTTATTTCTTTTATGGAACAAGGTAACCTACTTCAGATAGTGGACACATGCATACTAGAAGTGGCAAAAGTTGAAGAACTAATTGAGTTTGCTAATATTACAAAGTGGTGTTTGAGAGTGAAGGGAGAAGAACGACCTACCATGAAAGAAGTTGCCATGGGACTCGAGAGACTTAGAATTGAAGAGAAAATCAATCAAAAAAGTAGTGACTTGTTAGCTTTAAAAAAAGCTAACACATCGGCATCAACTTTCCAGATTGAAGATGACAGTGGTGGACAAAATGGGGCGAGTTTTAGTATGTGCCGGTTTCACATAGGCTAA 1344 0.375 MIAVKKPHAKIYSEATYVNVQKDTRDGRKNGTKCCHNDNYTKGYQRISKVALGVCGVVIVLLVASFYMYRKRKKTILIKLQQRFFQQNGGLLLQQQIASYKGSNQTTPKIFTVEELQDATNNFDEARILGKGGQGTVYKGVLTDDNIVAIKRSKLNHISQVEQFINEVVLLSQINHRNVVKLLGCCLETEVPLLVYEYVSNGTVYDHLHHDHDYSQSFQLDWKVRLQIATEAAGALAYLHFAASMPIIHRDVKISNILLDHNLTTKVSDFGTLRIISLDHTQLTTLMQGTLGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALSFALPEMDRNLALYFISFMEQGNLLQIVDTCILEVAKVEELIEFANITKWCLRVKGEERPTMKEVAMGLERLRIEEKINQKSSDLLALKKANTSASTFQIEDDSGGQNGASFSMCRFHIG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152441g00003 447 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 406 IPR045274 GO:0007166
Stsc152441g00003 447 Gene3D Phosphorylase Kinase; domain 1 94 198 - -
Stsc152441g00003 447 SUPERFAMILY Protein kinase-like (PK-like) 105 396 IPR011009 -
Stsc152441g00003 447 FunFam Wall-associated receptor kinase 2 199 418 - -
Stsc152441g00003 447 SMART serkin_6 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152441g00003 447 FunFam Wall-associated receptor kinase 2 92 198 - -
Stsc152441g00003 447 Pfam Protein kinase domain 124 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152441g00003 447 Gene3D Transferase(Phosphotransferase) domain 1 199 422 - -
Stsc152441g00003 447 ProSiteProfiles Protein kinase domain profile. 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152441g00003 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152441g00003 Stsc-Chr152441 8735 10339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152441g00003 44 431 Receptor kinase-like Gene Family AT1G21230 53.769 1.00e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc152441g00003 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152441g00003 - - aip:107607783 473.011