Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152432g00001 ATGTCATCATCATCATCTTCATCTTCTTCCTCTTCTTCCACTACATTATCACTGGACCACATCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACTGTTCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACCGTGACGGTTCGATGCGGCCATTGCACCAATCTGCTGCCTGTCAACATGCGAGGCCTTCTTCTTCCTTCGCCCAATCAATTCCATTTCGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATTCCGAACCCATCCCCGAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTCGGACTGTAGTTGATGAGCTACCACGCCCACCCATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTACCATCTGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTCTCAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA 669 0.4753 MSSSSSSSSSSSSTTLSLDHIPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHFGHSFFSPTHNLLEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTLKKTNVRQQEGEEVLMKDAGFYASANVGVSPY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152432g00001 222 FunFam Axial regulator YABBY 130 201 - -
Stsc152432g00001 222 CDD HMG-box_SF 139 175 - -
Stsc152432g00001 222 Gene3D High mobility group box domain 130 209 IPR036910 -
Stsc152432g00001 222 SUPERFAMILY HMG-box 129 178 IPR036910 -
Stsc152432g00001 222 PANTHER PROTEIN YABBY 6-RELATED 8 197 IPR006780 GO:0007275
Stsc152432g00001 222 Pfam YABBY protein 23 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152432g00001 Stsc-Chr152432 448 3456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152432g00001 34 220 C2C2-YABBY Transcription Factor Family AT4G00180 60.766 1.19e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc152432g00001 YABBY 4.9e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152432g00001 K25796 - gmx:100798441 403.29