Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152420g00003 ATGAGCGTGGAAGATCTTCCTCGGAAGGAGGTGAACGTGCTCAAGGGACATGAGGGCGCCGTCCTTGCCGCCAGATTCAACACCGATGGCAACTACTGCCTCAGCTGCGGCAAAGACCGCACCATACGCCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAATCCCACGGCCGCGAAGTCCGTGATGTCCACGTCACTTCGGACAACTCCAAGCTATGTTCGTGTGGTGGAGATCGCCAGATTTTTTATTGGGATGTAGCTACAGGCCGTGTAATTCGAAAGTTCCGTGGCCATGACGGTGAGGTCAATGCTGTGAAATTCAACGAGTATTCCTCTGTAGTTGTATCAGCTGGCTATGATCAATCCTTGCGTGCTTGGGACTGCAGATCCCACAGCACCGAGTCTATTCAGATTATTGATTCATTCTCAGATAGTGTCATGTCTCTTTGCTTAACAAAGACGGAAATCATTGGAGGAAGTGTGGATGGAACTGTTCGAACGTTTGACATTCGAATTGGCAGAGAAACATCTGATAACTTAGGGCAACCTGTTAACTGCATATCCATGTCAAATGATGGCAACTGCATTCTAGCTGGTTGTCTCGACTCGGCTCTGCGTCTTTTGGACAGATCTACAGGGGAGTTATTGCAAGAATATAAAGGTCACACTAATAAGTCTTTTAAATTGGATTGCTGCCTTACCAATTCGGATGCTCATGTAACTGCTGGCTCTGAGGATGGCTACATCTATTTTTGGGATCTTGTAGATGCATCGGTCGTGTCAAGATTCAGGGCTCATAACTCAGTGCTTGACAGAAGAAAATGA 834 0.476 MSVEDLPRKEVNVLKGHEGAVLAARFNTDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTESIQIIDSFSDSVMSLCLTKTEIIGGSVDGTVRTFDIRIGRETSDNLGQPVNCISMSNDGNCILAGCLDSALRLLDRSTGELLQEYKGHTNKSFKLDCCLTNSDAHVTAGSEDGYIYFWDLVDASVVSRFRAHNSVLDRRK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Stsc152420g00003 277 FunFam WD repeat domain-containing protein 83 5 275 - -
Stsc152420g00003 277 SUPERFAMILY WD40 repeat-like 6 272 IPR036322 GO:0005515
Stsc152420g00003 277 PANTHER WD40 REPEAT PROTEIN 4 270 - -
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Stsc152420g00003 277 CDD WD40 10 271 - -
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
Stsc152420g00003 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Stsc152420g00003 277 Gene3D - 5 275 IPR015943 GO:0005515
Stsc152420g00003 277 Pfam WD domain, G-beta repeat 216 256 IPR001680 GO:0005515
Stsc152420g00003 277 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Stsc152420g00003 277 Pfam WD domain, G-beta repeat 52 88 IPR001680 GO:0005515
Stsc152420g00003 277 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 215 256 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 135 172 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 176 212 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 7 46 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 49 88 IPR001680 GO:0005515
Stsc152420g00003 277 SMART WD40_4 91 130 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152420g00003 Stsc-Chr152420 8555 12746 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152420g00003 13 266 Eukaryotic Initiation Factors Gene Family AT2G46290 25.097 1.23e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152420g00003 K13124 - qsa:O6P43_030380 529.25