Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152402g00001 ATGAGCTTAGAAATGGAATACTCAGTGGATTCAATTGTGCTGGAAGGTGGCCCTTCAAAGCGGTTGAAGACTGAATCATGTGGATCTGGAACCAAGGCATGTCGAGAGAAACTGCGAAGGGACAAACTGAATGAGAGGTTTCTGGAACTGAGTTCCATCTTGGAGCCTGGTAGCAGGCAGCCCAAAACCGACAAGGTTGCCATATTAAGTGATGCCGTCCGAGTGGTAAACCAATTAAGAGATGAAGCAGAGAAGCTGAAGGAAATGAACTATGAAATGCTTGAAAAAATTAAAGAGCTCAAGGCCGAGAAGAATGAGCTTCGCGACGAGAAAAATAGGCTGAAGGTAGAGAAAGAGAATCTGGAGCAGCAGTTCAAGATGCCAAATGTTCAGCCAAGCTTCGTCCCCCATGCTCCACCAGCCGCGAAAGCCCAAGGTGCCAGCCAAAAGCTGATACCCTTCATAAGTTACCCTGGCATAGCCATGTGGCAGTTCATGCCACCAGCTGCAGTTGATACCTCAAAGGATCATCTCCTTCGTCCTCCAGTGGCATAA 555 0.4775 MSLEMEYSVDSIVLEGGPSKRLKTESCGSGTKACREKLRRDKLNERFLELSSILEPGSRQPKTDKVAILSDAVRVVNQLRDEAEKLKEMNYEMLEKIKELKAEKNELRDEKNRLKVEKENLEQQFKMPNVQPSFVPHAPPAAKAQGASQKLIPFISYPGIAMWQFMPPAAVDTSKDHLLRPPVA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152402g00001 184 CDD bHLH_AtILR3_like 32 108 - -
Stsc152402g00001 184 PANTHER BHLH TRANSCRIPTION FACTOR 12 184 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Stsc152402g00001 184 Pfam Helix-loop-helix DNA-binding domain 31 79 IPR011598 GO:0046983
Stsc152402g00001 184 SMART finulus 33 85 IPR011598 GO:0046983
Stsc152402g00001 184 Coils Coil 69 124 - -
Stsc152402g00001 184 Gene3D - 30 102 IPR036638 GO:0046983
Stsc152402g00001 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 103 IPR036638 GO:0046983
Stsc152402g00001 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 79 IPR011598 GO:0046983
Stsc152402g00001 184 FunFam Transcription factor bHLH104 30 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152402g00001 Stsc-Chr152402 2875 4866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152402g00001 12 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 64.045 2.50e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc152402g00001 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152402g00001 - - aip:107613798 331.257