Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152396g00004 ATGCTGAAGGACGTTGATGATATATATACAGTGAAAGAAATGGATCATGATGAATCTGTTGAGCTATTTTGTTGGCATGCATTCAAGAATAAGGAAATTCCTGCAGAAGATTATCGCGAACCTATCAAATTTATAGTTGAGTATTGTAGGGGAGTGCCACTTTTACTTGAAGTAGCAGGATCCCATTTATATGGAAAGATGATAGAAGAGTGGGAGAGTGCATGGGAAGAACTTGAGAAACATCCTCCTCATAAATTGCAGAGGTTTCGAAGAGTGAGCTTTGACAGTTTAAGTGATGATTCACTGAAGAAGGTATTTCTTGATATAGTGTGTTTCTTTATTGGGATGAACAGGAACTATGTTGTGAAAATATTGAAAGGCACTGGATATAATGGAGTAAAGGCAGAAAAGGCCTTAAGTGCCCTTGAAGATAAATGTTTAATAACTGTGGATGGGAACCAGCTTCAAATGCATCCCTTGATAGAAGAGATGGGAAGAGATATTGTTGAGGAGGAATCACATCTTGCTCCGAAGCTAAGTACCTATGATGTATTCTTGAGTTTCCGGGGAGAAGATACCCGCGCAACATTCACTTCACATCTCTATGCGGCTCTTGAAAATGCTGGATTTTATGTTTTCAAGGATGATGTTGAACTTCCAAGGGGAGAATGGATATCAATCTCACTACTGGAAGCAGTGAATGACTCTAGAATGTCTATTATTGTACTTTCTACAAATTATGCTGGTTCCAGATGGTGTCTGATAGAGTTAGAGAGTATAATGCAGCTTCAAAAGAACACAGCTCATGTTGTCGTGCCAATATTCTACGGCATAGATCCCTCAGAAGTACGTCACCAAACTGGTGCATTTGGGAAAAAGTTTAAAGATCTTTTAAGAAGACACTCAGTGGAAGAAGACCAGGAGAAAACTTGGAGGACATCGCTACATGAAGTTGGTAGCCTTTCAGGGATTGTTGTGGTAAATTCCAGGAATGAGAGCGAGGACATCAAGAAGGTTGTTGAAGATGTTACTCATTTGCTTGACAAGACAGAATTATTCATTGCAGACCATCCAGTGGGAGTAACATCTCATGTGCAAAATGTAGTCAATCTATTAATGGAACAGCAATCAAAAGATGTTTTACTACTTGGGATATGTGGCATGGGAGGAATTGGTAAAACAACCATTGCCAAAGCTCTTTATAATCAACTTGGTCGCAAATTTGATTGTAAGTGCTTCCTACTAAACATCAGGGAAGTTTGGGAGCAAGATAATGGTCAAGTTTCCTTACAAGTTCGTCTCCTTTCTGATATTTACAAAACAACAAAGATACAGATTCGTAGCACTGAAGCAGGCAAACTTGAATTGAAGAATCGACTTTGTCACAAAAAGGTGCTTCTTGTTCTTGATGATATAGATAAAGTGGAGCAAATGAATGCATTGTGTGGAAGTCATGAATGGTTTGGTTCTGGAAGCTGTATAGTAATCACAACAAGAGATGAGCATCTGGTTAAAATCCGTGGCGTTGACCCTATAATTTATAGACTGAAGGAAATGGTTGATAGTGAAGCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCATATCCAGACGAAAAATTTTCTGTCCTTACTAAAGAGGTAGTTGATTATTCTTCTGGACTGCCACTTGCTCTTGAAGTTCTTGGTTCCTATTTGTGTGATAGGGAAATCGAAGTGTGGAAGAATGCTTTGGGGAGACTTAAAAAGATTCCCAATCATAAAATACAGGAGAAGCTAAGAATAAGTTATGATAATCTTGCTTATGACACTGAGAAAGAGATATTTCTTGATATAGCATGCTTTTTCATTGGGATGGACCGGAGTGATGTCATTCAGATATTAAATGACTGTGGGCTTTATGCCGTAGATGGAATCAATGTCCTTAGAGAGCGAAGCCTTGTAACTGTTGACAACGCGAACAAGCTTGGAATGCATAATTTGCTAAGGGACATGGGAAGAGAAATAATTCGCCAGCAATCACCAGATGAACCTGAGAAGCGTAGTAGACTATGGCTTCATGAGGAAGTCCTTCATGTATTAACAGAATACAAGGGAACTACAACTATCACAGGACTGGCTTTGAAGTCACCAAAGATGGATCCAATTTCATTGAGCACAAAGGCATTTAAAGAGATGAATAAACTCAGATTGCTTCAGCTCGAAAAAGTAAAGCTTGATGGAGATTTCAAATATATTTCTAGAGATCTTAGATGGATGAGTTGGCATGGATTCCCTTTGAGTCACATTCCTAAAAACTGCTATCAGAAAGGTTTAGTTGCCATTGAATTGGAGTATGGCAATCTCAAAATAGCATGGAAGCAGGCTCAGGTTCTAAATAAGCTGAAAATTCTGAATCTCAGTCATTCTCATCAATTGAGAGAAACTCCAGACTTTTCATACTTACCTAACCTTGAAAAGCTAATACTCGAAGATTGTCCGAGTTTGTCTTCGGTTTCCCACACCATTGGACATCTCAATCATCTTCTTCTGATAAATCTGAAAGATTGTAAAAGCCTTCGGAGCCTTCCGCAAAGCATCTATAAGTTGAAGTCCCTCAATACTCTCATTCTTTCCGGATGCTTAATGATAGAAAAGTTGGAAGAGGACATGGAACAGATGGAATCTTTGACAATCTTGAAGGCAGAAAACACTGCTATAGCACAAGTTCCAAATGCAATAGTAAGAATGAAAAGTATTGCTTATATATCTTTGCCTGGCATTGAAGGATTGGTTCGTGATGTTCTTCCATCTATCATATGGTCATGGACCTGCCCAACAAATAATGTGCCATCTCTAATAGAAAATACTCTCCAACATCTATTATCTATGATCAGAAAACTTCCAAAGCGTAGTAGTTTTTTTTTGGAATCCGGTTCACAACTTCAGGTACCTGAAGATGTGTTCTCGGAAACCTTAGATGCTACAAATTGCAAGGTACCTAATGTAGATGAAAATGCCTCTGGTGTTGATGATATCACAGAAGATGAGAATGTGATTGTTTCGGATACTGATGATATGGAGACCGATACGAATGAAGATACTTCTGATGCTGAAGATATGGCAGTTGACAGAAATGCTGTTGTTTCTGATACGCTAGCAGATAGAAGCATTGATATCATTTCCAATGGAGGTGAAAGTGGAGTTAGAAGATTCTCCAGACTTCGTTCTCTTGTTCATGTTGTTTGGAAATCAAGGCTATTTTGGCTCGGTTTTATTGCGGTTCTAATTTGGATCACATGCAGTTATTCTGAAAATCAAGAAAGTTCAACCTCATTTCAAGTATATCAGCCCACACCCACTTTTAAGGAAGCAGAGATGATTCCCAATAAGCAACTAGAGAAGTGGTCAGAGGAGAAAAATAACAGAAAGAATATAATCTCCTCATGTAGCCAAAGTGTTGAGGAGCCTCTGCAGGAAAAGGAAAAAATCGAAGCATCGGCGACCATCAAGAACTTTAGGCCAAAGTCTAAGGGAGACGTGCCTTTAGTTAAGACATCTCCACCTGGAATTGCTTCATTTTCTAACTCGCAAAAGATGGCAGACAATTCAGAGTATGATAGCAATACTCAAAATCAAGAAGATCAACTGCTTCAGACCCTTTTTGCTTCAAATCCTAAAGATGATGAGCTTTCTTTGATTGCTGATCCTACATTACTAGTCACCACCACAAGACCTACTATAGATGCAAAAGATGCTAAGCTTCATGACGATAAGGATTTGTTAGCTGAGCTAGAACAAATCTTGTCAGAGAGCTATGTCTTGTCCCCGACTAAGGCCGCTTCTGCTACTTCTGTATCAGAACTTCAAAGTCTTCCAGTCACTGCAATCATTCAAAAAGTACGACAATTATTGGATAATGAAGTAGAAACTTTAGTAGCAGATAGTGACATTAAAAAACAGCTTCTTGACTACTTAGCTCATCTGGTTCAAATGAAGTCACAAGTCCCTACAAATATTCAGAAGTTGGTCAATGAGATTAAGCAATTTTATGAAGGTTTTCTTAGTAACTTTCCACCTATTCAAGAAGTCTTGGACAATCATCAAAGGTTAATTGACACTAAGAAAAGACTTGAGGGGGAGGTAGAAATGGCTAAGGTCAAGCAGGCTCATTTTTCTACTTCAATTTCTAAAGGTAAAGAGAGGATCAGTGAGATGTCAAAAGAGATCAATGACTTGGAGGTGAAAGTTAAAGCCTTATATGAGAAGAGAGACAAGTTGAAATCCACAGTGAAACTTTGTGAGGTTGAAACGATAAACATCAATAGGAAAGCTGTCACTTGGGTGGAAGAAAGTGAAGAGGTTGTGAGCTCTCTCAAAGCTTCAAAGTCTGCCTTCAAAAATGCTGAATCATCAAAACAGAATTACGAGAAGAAGCTAATTGAATTGAAAAGAGCTCTTGGCAACATTAAACAGTAG 4461 0.3858 MLKDVDDIYTVKEMDHDESVELFCWHAFKNKEIPAEDYREPIKFIVEYCRGVPLLLEVAGSHLYGKMIEEWESAWEELEKHPPHKLQRFRRVSFDSLSDDSLKKVFLDIVCFFIGMNRNYVVKILKGTGYNGVKAEKALSALEDKCLITVDGNQLQMHPLIEEMGRDIVEEESHLAPKLSTYDVFLSFRGEDTRATFTSHLYAALENAGFYVFKDDVELPRGEWISISLLEAVNDSRMSIIVLSTNYAGSRWCLIELESIMQLQKNTAHVVVPIFYGIDPSEVRHQTGAFGKKFKDLLRRHSVEEDQEKTWRTSLHEVGSLSGIVVVNSRNESEDIKKVVEDVTHLLDKTELFIADHPVGVTSHVQNVVNLLMEQQSKDVLLLGICGMGGIGKTTIAKALYNQLGRKFDCKCFLLNIREVWEQDNGQVSLQVRLLSDIYKTTKIQIRSTEAGKLELKNRLCHKKVLLVLDDIDKVEQMNALCGSHEWFGSGSCIVITTRDEHLVKIRGVDPIIYRLKEMVDSEAIELFSWHAFKQAYPDEKFSVLTKEVVDYSSGLPLALEVLGSYLCDREIEVWKNALGRLKKIPNHKIQEKLRISYDNLAYDTEKEIFLDIACFFIGMDRSDVIQILNDCGLYAVDGINVLRERSLVTVDNANKLGMHNLLRDMGREIIRQQSPDEPEKRSRLWLHEEVLHVLTEYKGTTTITGLALKSPKMDPISLSTKAFKEMNKLRLLQLEKVKLDGDFKYISRDLRWMSWHGFPLSHIPKNCYQKGLVAIELEYGNLKIAWKQAQVLNKLKILNLSHSHQLRETPDFSYLPNLEKLILEDCPSLSSVSHTIGHLNHLLLINLKDCKSLRSLPQSIYKLKSLNTLILSGCLMIEKLEEDMEQMESLTILKAENTAIAQVPNAIVRMKSIAYISLPGIEGLVRDVLPSIIWSWTCPTNNVPSLIENTLQHLLSMIRKLPKRSSFFLESGSQLQVPEDVFSETLDATNCKVPNVDENASGVDDITEDENVIVSDTDDMETDTNEDTSDAEDMAVDRNAVVSDTLADRSIDIISNGGESGVRRFSRLRSLVHVVWKSRLFWLGFIAVLIWITCSYSENQESSTSFQVYQPTPTFKEAEMIPNKQLEKWSEEKNNRKNIISSCSQSVEEPLQEKEKIEASATIKNFRPKSKGDVPLVKTSPPGIASFSNSQKMADNSEYDSNTQNQEDQLLQTLFASNPKDDELSLIADPTLLVTTTRPTIDAKDAKLHDDKDLLAELEQILSESYVLSPTKAASATSVSELQSLPVTAIIQKVRQLLDNEVETLVADSDIKKQLLDYLAHLVQMKSQVPTNIQKLVNEIKQFYEGFLSNFPPIQEVLDNHQRLIDTKKRLEGEVEMAKVKQAHFSTSISKGKERISEMSKEINDLEVKVKALYEKRDKLKSTVKLCEVETININRKAVTWVEESEEVVSSLKASKSAFKNAESSKQNYEKKLIELKRALGNIKQ 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152396g00004 1486 SUPERFAMILY "Winged helix" DNA-binding domain 589 695 IPR036390 -
Stsc152396g00004 1486 Gene3D - 519 602 IPR042197 -
Stsc152396g00004 1486 Coils Coil 1355 1382 - -
Stsc152396g00004 1486 SUPERFAMILY "Winged helix" DNA-binding domain 85 175 IPR036390 -
Stsc152396g00004 1486 Coils Coil 1453 1486 - -
Stsc152396g00004 1486 PRINTS Disease resistance protein signature 382 397 - -
Stsc152396g00004 1486 PRINTS Disease resistance protein signature 459 473 - -
Stsc152396g00004 1486 PRINTS Disease resistance protein signature 791 807 - -
Stsc152396g00004 1486 PRINTS Disease resistance protein signature 553 567 - -
Stsc152396g00004 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 109 IPR027417 -
Stsc152396g00004 1486 MobiDBLite consensus disorder prediction 1172 1205 - -
Stsc152396g00004 1486 FunFam Disease resistance protein (TIR-NBS-LRR class) 178 349 - -
Stsc152396g00004 1486 SUPERFAMILY L domain-like 712 964 - -
Stsc152396g00004 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 613 IPR027417 -
Stsc152396g00004 1486 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 182 992 IPR044974 GO:0006952
Stsc152396g00004 1486 SMART till_3 181 321 IPR000157 GO:0007165
Stsc152396g00004 1486 SMART AAA_5 379 518 IPR003593 GO:0016887
Stsc152396g00004 1486 ProSiteProfiles TIR domain profile. 180 347 IPR000157 GO:0007165
Stsc152396g00004 1486 Gene3D - 178 351 IPR035897 -
Stsc152396g00004 1486 Pfam NB-ARC domain 363 598 IPR002182 GO:0043531
Stsc152396g00004 1486 Pfam NB-ARC domain 6 84 IPR002182 GO:0043531
Stsc152396g00004 1486 Coils Coil 1390 1424 - -
Stsc152396g00004 1486 Gene3D - 14 104 IPR042197 -
Stsc152396g00004 1486 SUPERFAMILY Toll/Interleukin receptor TIR domain 181 323 IPR035897 -
Stsc152396g00004 1486 Gene3D Ribonuclease Inhibitor 686 1044 IPR032675 -
Stsc152396g00004 1486 Pfam TIR domain 182 345 IPR000157 GO:0007165
Stsc152396g00004 1486 Gene3D - 352 508 IPR027417 -
Stsc152396g00004 1486 MobiDBLite consensus disorder prediction 1183 1205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152396g00004 Stsc-Chr152396 8837 15519 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152396g00004 165 927 WRKY Transcription Factor Family AT4G12020 28.872 9.89e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152396g00004 - - aip:107625704 2395.93