Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152396g00002 ATGCTAATTCAAAATGATCCTGCAGATGTACGCTATCAAAGAAAAGAGAGTGACTTTGGGAAAGCTTTTGAAAGTCTTATAAATGGTAAAAGACCAGTGGAAGCAGATAAGGTGAGAAGATCGAAAGCAGATCTTTTTGAAGTTAGTAATTTTTCAGGGATGACACTGATGAATTCCAGGAATGAAAGTGAAGATATCAAAAAAACTGTTACAGACATTACTGGTTTGCTAGATAAGACAGAGATGTTCATTGCACGTCATCCAGTGGGAGTATCATCTCGCATGCAAAAGGTGATTGAAAAATCAAGCATTCAACAAACAAAAGATGTTCTGACAATTGGGATAAATGGCATGGGTGGCATTGGTAAAACAACTATTGCCAAAGCCATCTATAATCAAATTGGTCGCGACTTTGAAGCAAGGAGCTTCCTCCAAGACATTGGGAAAACTTGGCAGCAAGATAATGGAAATGTTTCCTTGCAGCAGCGACTTCTTGAGGATATATTCGGGGCAACAAGGATAGATATAGCTAATATTGATTCAGGGAAGCAAATATTAAAGGATAAGCTTAGAGGTAAGAGGGTATTCATTGTGCTTGACGATGTGAATGATTTGGACCAACTCGATGCATTGTGTGGTAGTGGTGAATGGTGTGGTTCTGGGAGCATAGTAATCATCACAACAAGAAATAATGATCTTCTTCGAGTGTGTAAACACACATTCAGTGTAGAGAAGATGAATGAGGCTGAATCCCTTGAGCTCTTTAGCTGGCATGCATTCAAACAGGCACATCCAAAACAAGATTTTGTTAAGCTATCTAAAGATGTAGTTGAATATTCTAATGGATTGCCACTAGCTCTGCAAGTTCTTGGATCCCATTTGTTTGGCAGAGGAATGGTAGAGTGGGAAAGTGCATTGGACAGACTGAAATCAATTCCCCCTAAAAAAGTGAAGGAGAAACTACAAATAAGTTATGATAGTTTAAGTGATTATCCTGAGAAAAAAATATTCCCTGACATCGCATGCTTTTTCATAGGGATGGATCGAAATGAAGTTATCCAGATATTAAATAGTTGCGGTGGGCTCCATGCAGAAACTGGAATCAGTGTCCTTATAGAGCGAAACCTTGTAACTGTTGATAAAAATAATGTGCTTGGAATGCATGACTTGCTACAAAAAGATGGCGAGAGCAATAATTCATGA 1203 0.3849 MLIQNDPADVRYQRKESDFGKAFESLINGKRPVEADKVRRSKADLFEVSNFSGMTLMNSRNESEDIKKTVTDITGLLDKTEMFIARHPVGVSSRMQKVIEKSSIQQTKDVLTIGINGMGGIGKTTIAKAIYNQIGRDFEARSFLQDIGKTWQQDNGNVSLQQRLLEDIFGATRIDIANIDSGKQILKDKLRGKRVFIVLDDVNDLDQLDALCGSGEWCGSGSIVIITTRNNDLLRVCKHTFSVEKMNEAESLELFSWHAFKQAHPKQDFVKLSKDVVEYSNGLPLALQVLGSHLFGRGMVEWESALDRLKSIPPKKVKEKLQISYDSLSDYPEKKIFPDIACFFIGMDRNEVIQILNSCGGLHAETGISVLIERNLVTVDKNNVLGMHDLLQKDGESNNS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152396g00002 400 Pfam NB-ARC domain 94 328 IPR002182 GO:0043531
Stsc152396g00002 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 339 IPR027417 -
Stsc152396g00002 400 SUPERFAMILY "Winged helix" DNA-binding domain 316 395 IPR036390 -
Stsc152396g00002 400 FunFam Disease resistance protein (TIR-NBS-LRR class) 247 329 - -
Stsc152396g00002 400 Gene3D - 245 329 IPR042197 -
Stsc152396g00002 400 Gene3D - 1 80 IPR035897 -
Stsc152396g00002 400 PRINTS Disease resistance protein signature 189 203 - -
Stsc152396g00002 400 PRINTS Disease resistance protein signature 112 127 - -
Stsc152396g00002 400 PRINTS Disease resistance protein signature 280 294 - -
Stsc152396g00002 400 Gene3D - 81 244 IPR027417 -
Stsc152396g00002 400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 395 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152396g00002 Stsc-Chr152396 3308 5231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152396g00002 89 395 WRKY Transcription Factor Family AT5G45050 37.419 2.77e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152396g00002 - - aip:107625711 556.599