Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152388g00002 ATGGCTTCCCGGGAAAGCACTAACTGGCTTTTCGATTATGCTTTGATTGACGATATTCCTGTCCACGATGCAACTTTCGCTGCTCCTTCCTCCGGTTTCAATTGGCCTACGAACGCCATCAATGGTTCTTCAAATGTCGGTGTTGAAATTGATGGCTCGTTGGGTGATTCTGATGGTATCAAAGAATCTGGTTCAAAGAAGAGGGGCAGATCTGAGTCATGTGCTCCTTCTAGCTCGAAGGCATGTAGGGAGAAATTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCAGCTATTCTGATTGATGCCGTCAGAATGGTGACACAATTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCGAATATGGGTCTACAAGAAAAGATTAAAGAGCTGAAGGCTGAGAAGAATGAGCTTCGGGACGAGAAGCAGAGACTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAATCTATGAACGCACATCCTAGTTTCATGCCTCCTCCTGCTGCGATACCCACCGCGTTTGCTCCTCAAGGTCAAGCCCCTGGCAACAAGCTCGTACCGATAATCAGCTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCGGTTGATACATCCCAGGATCATGTACTCCGCCCACCGGTTGCCTAA 711 0.4852 MASRESTNWLFDYALIDDIPVHDATFAAPSSGFNWPTNAINGSSNVGVEIDGSLGDSDGIKESGSKKRGRSESCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNAHPSFMPPPAAIPTAFAPQGQAPGNKLVPIISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152388g00002 236 Gene3D - 76 152 IPR036638 GO:0046983
Stsc152388g00002 236 MobiDBLite consensus disorder prediction 51 86 - -
Stsc152388g00002 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983
Stsc152388g00002 236 SMART finulus 81 132 IPR011598 GO:0046983
Stsc152388g00002 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Stsc152388g00002 236 CDD bHLH_AtILR3_like 80 155 - -
Stsc152388g00002 236 Coils Coil 123 178 - -
Stsc152388g00002 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Stsc152388g00002 236 FunFam Transcription factor bHLH34 66 124 - -
Stsc152388g00002 236 PANTHER BHLH TRANSCRIPTION FACTOR 5 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152388g00002 Stsc-Chr152388 3126 6450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152388g00002 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.385 3.40e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc152388g00002 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152388g00002 - - gmx:100788858 391.734