Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152387g00001 ATGGAGTTCGAGGAAGAGTTCACCATGCCCCCACCACCACCGAGTTACGCTGACTCAGTTCCCAATACTTCCCGTGTCAAAATGCCCACTCACTCACCTCCACCACCACCCATGCCACGAAACAGCGGTAAGGGGAGGTACAGGGAGTGTCTCAAGAACCACGCGCTCGCCATCGGAGGCCACGCGCTCGATGGCTGCGGCGAGTTCATGCCCGCCGGACCTGACGGAACCCTCGACGCACTGAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAAATCGTCGGAGGAGACCCTTTCTTGGTACCTCACCACCACCACCACAACCCTTTCCATAACCATCTCCATGGCCACCACCAAGCATTTCCGCAATTCGCGGCGTGTTACCGTGGTCAGGGAACTGGATACCTGCAGGTGTCAGGACATCAAAGAGGAGGAGGCGGTACTCCGACTCTAGCTCTGCCGTCGATCTCAGGCGGCGGCGGCGGTACGACACAGAGCACCCGGGAGGATCATGAGGATGGTTCGGAACCGAGTGGTGGAGGTGGTGTAGGGTCATCGTCCAAGAAGAGGTTCAGAACGAAGTTCAGTGCGGAGCAGAAGGAGAAGATGGTGGTGTTTGCGGAGAGCATAGGGTGGAAGCTTCAGAAGCATGATGAGGTGGCGGTTCAGGAGTTCTGCAATGAGATTGGAGTGAAGCGTCATGTTCTCAAGGTTTGGATGCATAACCACAAGAACACCCTCGCTATGAAGAAGCCCTAG 771 0.572 MEFEEEFTMPPPPPSYADSVPNTSRVKMPTHSPPPPPMPRNSGKGRYRECLKNHALAIGGHALDGCGEFMPAGPDGTLDALKCAACNCHRNFHRKEIVGGDPFLVPHHHHHNPFHNHLHGHHQAFPQFAACYRGQGTGYLQVSGHQRGGGGTPTLALPSISGGGGGTTQSTREDHEDGSEPSGGGGVGSSSKKRFRTKFSAEQKEKMVVFAESIGWKLQKHDEVAVQEFCNEIGVKRHVLKVWMHNHKNTLAMKKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152387g00001 256 Gene3D - 178 253 - -
Stsc152387g00001 256 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Stsc152387g00001 256 MobiDBLite consensus disorder prediction 142 194 - -
Stsc152387g00001 256 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 251 - -
Stsc152387g00001 256 MobiDBLite consensus disorder prediction 1 43 - -
Stsc152387g00001 256 FunFam Zinc-finger homeodomain protein 2 184 253 - -
Stsc152387g00001 256 Pfam ZF-HD protein dimerisation region 46 97 IPR006456 -
Stsc152387g00001 256 SUPERFAMILY Homeodomain-like 180 250 IPR009057 -
Stsc152387g00001 256 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 46 97 IPR006456 -
Stsc152387g00001 256 NCBIfam homeobox domain, ZF-HD class 192 249 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152387g00001 Stsc-Chr152387 1355 2125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152387g00001 43 251 ZF-HD Transcription Factor Family AT4G24660 49.763 2.74e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc152387g00001 ZF-HD_dimer 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152387g00001 - - qsa:O6P43_033224 246.514