Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152385g00003 ATGTCATCTCCACCTTCTTCACCCTCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGCTTTCCTTGTCCTCCTCTCCACCCTCATCTTATCCTCTTACCTCTGCTGTAACCGTAATCGTAACCGCAGTAATAATCACAACAACAACCAACGTTCCCACCCCGCCGCCACCAACCGTGACGGCGTCGTTCTGCCACGAATAATCTTCGTGGCAGAAGGAGATGACGACGAAGAAGGAGGAGACGAAGAACGCGGTGCGGTGGGACTGGATCAGAACGTCATAAACTCGTATCCGAGGTTTCAGTTCAGCAGGGACAGCAGTAACAATGGACAGAACACCACGTGTTCCATATGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTAGGCACTACTTCCACGTGTGCTGCCTTGATTCTTGGCTTAGGCTTAACGGATCCTGCCCCGTTTGTCGGAACTCGCCGCTTCCCACGCCTCAGCCTACGCCGCTGTCGACGCCGCTTCAGGAGGTGGTGCCGTTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 585 0.5385 MSSPPSSPSFLNHLGLGYSIAIALAFLVLLSTLILSSYLCCNRNRNRSNNHNNNQRSHPAATNRDGVVLPRIIFVAEGDDDEEGGDEERGAVGLDQNVINSYPRFQFSRDSSNNGQNTTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPQPTPLSTPLQEVVPLSQYAADRRRR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152385g00003 194 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Stsc152385g00003 194 PANTHER RING-H2 FINGER PROTEIN ATL67 7 194 IPR044289 GO:0016567|GO:0016740
Stsc152385g00003 194 MobiDBLite consensus disorder prediction 169 194 - -
Stsc152385g00003 194 Pfam Ring finger domain 119 162 IPR001841 -
Stsc152385g00003 194 SUPERFAMILY RING/U-box 107 170 - -
Stsc152385g00003 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 166 IPR013083 -
Stsc152385g00003 194 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152385g00003 Stsc-Chr152385 7533 8649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152385g00003 3 185 C3H Transcription Factor Family AT5G07040 39.459 4.28e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152385g00003 - - qsu:112012943 259.225