Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152381g00001 ATGAATAATAATAATAAGTTAAGCAACTTGAGCTCAGTGAGCAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTATGTGGAGGATCCAAGCAATGTCCCGGTTGTGGCCACAAATTCGAATCCAAACCGGATTGGCTAGGTTTACCGGCCGGAGTAAAATTTGATCCGACAGACCAAGAACTAATAGAGCATCTCGAAGCGAAGGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCAACCATTGAAGGTGAAGATGGCATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGGTTAAGCAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACGGGAACAAGAAAGAGGAGAAAAATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAAACCGGTAAAACTAGACCGGTTATGGTTAACGGAAAACAAAAGGGTTGCAAGAAGATCTTGGTACTCTATACTAATTTCGGAAAGAATCGGAAGCCGGAGAAGACAAATTGGGTTATGCATCAATACCATTTGGGGCAACATGAGGAGGAGAAAGAGGGGGAGCTTGTTGTGTCCAAGATATTCTATCAAACTCAGCCTCGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCACCACTGCTACCGCCGAAGGGAGTGGAGATCCGTTACAAAGTAGTAGAAGGGATAGTGGGAGTGGAAGTTGTTCTTCTAAGGAAATTAATGTCGGTCACAGAGATGAGACGATGTCTGCTGTGGTTGGACTCACCACGAATCCAATCACGAGCTTTGCTCATCCCTTGGACATTCATCAGCATTTCAAATCGGATCATTTTAGCTTCATCCCATTTAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGAACATGAAGTAGTGCATGAACATGTAAATGATCATCATCAACAACAACAACATCATCATCAAATTGCAACATCGGCATTTCATATAAGTAGGCCTTCACATCCAATATCTACCTTAATATCTCCACCACCACTTCATCACACATCCATCATCCTAGATGATACCTCCTACCACCAAGTCTCCAGAATAATGCTTCAAAATGAACATTTCCAGCAACAACAACAACATCAACATCATCAACAGCATCATCATAAAATGGGAGGAAGGTCTGCTTCTGGTTTGGAGGAACTCATAATGGGATGCACTTCTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1389 0.4341 MNNNNKLSNLSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTTTATAEGSGDPLQSSRRDSGSGSCSSKEINVGHRDETMSAVVGLTTNPITSFAHPLDIHQHFKSDHFSFIPFRKSFDEVGIGEASTAREVQASGSCEHEVVHEHVNDHHQQQQHHHQIATSAFHISRPSHPISTLISPPPLHHTSIILDDTSYHQVSRIMLQNEHFQQQQQHQHHQQHHHKMGGRSASGLEELIMGCTSSSDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152381g00001 462 SUPERFAMILY NAC domain 46 212 IPR036093 GO:0003677|GO:0006355
Stsc152381g00001 462 ProSiteProfiles NAC domain profile. 51 212 IPR003441 GO:0003677|GO:0006355
Stsc152381g00001 462 Pfam No apical meristem (NAM) protein 52 193 IPR003441 GO:0003677|GO:0006355
Stsc152381g00001 462 FunFam NAC domain-containing protein 73 60 216 - -
Stsc152381g00001 462 MobiDBLite consensus disorder prediction 219 256 - -
Stsc152381g00001 462 Gene3D NAC domain 60 216 IPR036093 GO:0003677|GO:0006355
Stsc152381g00001 462 MobiDBLite consensus disorder prediction 394 413 - -
Stsc152381g00001 462 MobiDBLite consensus disorder prediction 219 260 - -
Stsc152381g00001 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 385 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152381g00001 Stsc-Chr152381 6375 10808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152381g00001 14 459 NAC Transcription Factor Family AT5G56620 51.163 3.13e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc152381g00001 NAM 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152381g00001 - - gmx:100795246 724.161