Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152360g00001 ATGTCAACTTTGCAGATGTCCCATGTTGTTGATTTAGAGCAGGGAAATCAGGATGATGTTGTTGTTGTTGTTGTTGGGGGTGGTGGTGGGAATGATGATGATGATTCTAGCGTGTGTTTCTCTGATGCAGAAGACGGTGGTTCATGCCACTCTCATTTCTATTCAACACATGGTGATGGTGGCTCAGCCTTTGATGATTGCAGCTTCTCATGTGTCTCTGATCCTGAAGCTGCTGCTGTTGTTCATTCTTCTGGGAGGGCTTCTTCTGCCTCTGATTGCTCTGTGGACCTGGGAAATGCAACTGGGGTTCCTGAAATCAAACTGCATTTGAATAACAACAACATCAAAGTGGAGAGGGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGATAGTTCTGAGTCTGGTGTTCCAATTGAATTGGGTTGTGCTTGTAAAGATGATCTTGCTGCTGCTCACAAAATCTGTGCTGAGACATGGTTCAAGATTAAGGGGAATTTGATCTGCGAAATTTGTCATTCTGTTGCAAGGAATGTTAATGGAGCACTTGACCATTCAAGTGACAGTAACAATACCGCCACAATAGCCGCACTTTCGTCACATGCTACTCCAGCAGAAGCCCGAAGATTTTGGCACGGCCATCGCTTCCTGAACTTTCTCCTTGCTTGTATGGTTTTCGCATTCGTCATATCATGGCTTTTCCATTTCAATGTGCCGTCGTCGTAG 726 0.4477 MSTLQMSHVVDLEQGNQDDVVVVVVGGGGGNDDDDSSVCFSDAEDGGSCHSHFYSTHGDGGSAFDDCSFSCVSDPEAAAVVHSSGRASSASDCSVDLGNATGVPEIKLHLNNNNIKVERDCRICHMGLESDSSESGVPIELGCACKDDLAAAHKICAETWFKIKGNLICEICHSVARNVNGALDHSSDSNNTATIAALSSHATPAEARRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 241
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc152360g00001 241 PANTHER ZINC FINGER, RING-CH-TYPE 31 240 - -
Stsc152360g00001 241 ProSiteProfiles Zinc finger RING-CH-type profile. 113 179 IPR011016 GO:0008270
Stsc152360g00001 241 SMART ringv_2 120 173 IPR011016 GO:0008270
Stsc152360g00001 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 182 IPR013083 -
Stsc152360g00001 241 Pfam RING-variant domain 121 172 IPR011016 GO:0008270
Stsc152360g00001 241 SUPERFAMILY RING/U-box 118 175 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc152360g00001 Stsc-Chr152360 7005 10048 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152360g00001 80 241 C3H Transcription Factor Family AT5G05830 58.084 6.67e-63 194
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152360g00001 - - ahf:112743475 404.831