Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc152360g00001 | ATGTCAACTTTGCAGATGTCCCATGTTGTTGATTTAGAGCAGGGAAATCAGGATGATGTTGTTGTTGTTGTTGTTGGGGGTGGTGGTGGGAATGATGATGATGATTCTAGCGTGTGTTTCTCTGATGCAGAAGACGGTGGTTCATGCCACTCTCATTTCTATTCAACACATGGTGATGGTGGCTCAGCCTTTGATGATTGCAGCTTCTCATGTGTCTCTGATCCTGAAGCTGCTGCTGTTGTTCATTCTTCTGGGAGGGCTTCTTCTGCCTCTGATTGCTCTGTGGACCTGGGAAATGCAACTGGGGTTCCTGAAATCAAACTGCATTTGAATAACAACAACATCAAAGTGGAGAGGGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGATAGTTCTGAGTCTGGTGTTCCAATTGAATTGGGTTGTGCTTGTAAAGATGATCTTGCTGCTGCTCACAAAATCTGTGCTGAGACATGGTTCAAGATTAAGGGGAATTTGATCTGCGAAATTTGTCATTCTGTTGCAAGGAATGTTAATGGAGCACTTGACCATTCAAGTGACAGTAACAATACCGCCACAATAGCCGCACTTTCGTCACATGCTACTCCAGCAGAAGCCCGAAGATTTTGGCACGGCCATCGCTTCCTGAACTTTCTCCTTGCTTGTATGGTTTTCGCATTCGTCATATCATGGCTTTTCCATTTCAATGTGCCGTCGTCGTAG | 726 | 0.4477 | MSTLQMSHVVDLEQGNQDDVVVVVVGGGGGNDDDDSSVCFSDAEDGGSCHSHFYSTHGDGGSAFDDCSFSCVSDPEAAAVVHSSGRASSASDCSVDLGNATGVPEIKLHLNNNNIKVERDCRICHMGLESDSSESGVPIELGCACKDDLAAAHKICAETWFKIKGNLICEICHSVARNVNGALDHSSDSNNTATIAALSSHATPAEARRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc152360g00001 | 241 | PANTHER | ZINC FINGER, RING-CH-TYPE | 31 | 240 | - | - | |
Stsc152360g00001 | 241 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 113 | 179 | IPR011016 | GO:0008270 | |
Stsc152360g00001 | 241 | SMART | ringv_2 | 120 | 173 | IPR011016 | GO:0008270 | |
Stsc152360g00001 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 182 | IPR013083 | - | |
Stsc152360g00001 | 241 | Pfam | RING-variant domain | 121 | 172 | IPR011016 | GO:0008270 | |
Stsc152360g00001 | 241 | SUPERFAMILY | RING/U-box | 118 | 175 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc152360g00001 | Stsc-Chr152360 | 7005 | 10048 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc152360g00001 | 80 | 241 | C3H Transcription Factor Family | AT5G05830 | 58.084 | 6.67e-63 | 194 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc152360g00001 | - | - | ahf:112743475 | 404.831 |