Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152348g00001 ATGACGACGAGTACCATAGTAAGAGAACAGAACCTGGAGAAGCACATTCACAAACAAATGGGGTGCATGGCTGGCTTCCTTAACATTTTTGACCGCCACCAGATTCTCGCCGGAAAACGCATCTCCTGCGCCAAACGACTCCCTGCTCCGCAACCGGAATCCTCACCAGAGCCGGAGAGCCACGTGGCTTCACCGGCGCGTCCTTCAACGCCATCACCAGAGCGCGTGAAAAAGAGCCCAGCGAGAGAGCACACGGTTACGACTGTTACTACTCTACCGGTTCTAGAATTCAAGGAAGGGACGAGGTCCACGTGGAAGTTCTCAAGGGAGGCTCCGAGGCTCTCATTAGATAGCAGGACCCGAACCACCTCCCCGAGCCTGAGCCTCTCCCCAAACCTCACTCCAGACAACGGAGGAGAGAAACTGTCTTCAGAGATACAGTTACAGCGCCGTTCAACAAGCGTCGTAGCGAGGCTCATGGGCCTGGAGCCCTTACCGGGCCCAGACTCGGATCCAGGGCCCAATAAGAAACCTGAGCTCCGAAGATCCGCTTCCGAATCCAGAGCCTCCAGAGATCTCAACCGTTTCTTCGACGCCGCTAACAGCAACGGTTTTCAGCTGAACCTCAAGCAGGTGCAGCAACGGCAACAGTACACTCAACCGCAGGGGATAGTCTCTGAGGGTTTGAACAACAATGCAGGTTCAGATCCGGCGAAGCAGGGTGCACGGAACAACAACAACGCGAAGCGAGAGAAGAACTATAACAGCAATGCAAGGAACAGGGGAGTGGTTACGATGGTGCAGAAGAAGAGCTTCTTTGACTCCGCGGATTTCTTTCCCGAGGTACCAAAACGCAGCGTTTCGATCTACGGCGAGATCGAGAGGAGGCTGAGGATGCGAGGTATCGACGAGCCTTCGAAGGATCTAGAAACTCTGAAACATATCTTGGAGGCATTGCAGCTTAAAGGACTCTTGCATTCGAAGAATCACGCAAATCGAAGTAACTGTAACAACCACTACAATATTAATGACATTTACAATCAAAATCACATGAACTTCGTTCTCGATGGCGGAAGAATGAAGAACGATTCTCCTATTGTTTTGATTAAACCGGTTCGATCCAACCGAACCGGTAGCGATTCCCCGACGTCAAACGTCCGGTCTAGTCCGAGGGCTCGCCGGAACGAACGTCAGCCGGAGTTTGATCGGAGAAGTAGAAATGCGAAATCGCCGCCGGTTTGTAGGAGCCCGAACCGGAGGAATGTAGTGGCGAACGCGGCGGAGAATCATCACCAGAGTAGAGTGAATGTCTACGACGGCTTTGATTCGAGAAAGGTGTCTCCGGTTCAGTCGCCGAGAGTAAACTCAAGAAGAAACACTCCGGTTCATTCTCCAAGAATGAAAAAACCGTTTGATCAGAAGGAAGAGAAGGTGTTGACTGTAGCAGAGGATGAATCTTCCACAGTTTCAGAGAGTAGCTTCAGCACTTCTTCACATACAGATACAGAGAGGTACAGATTGGAAGAGTACAAAGAAGGGAGGAATTTACTGGACAGGTGTGACAAGTTGCTGAACAGCATAGCGGAAATGACGGCCTCGAACGAGTTGCAACCGAGTCCCGTATCGGTGCTTGACTCGTCTTTCTACAGGGACGACTGGTGTTCACCTTCCCCAATCACAAAACGCTGCATTGATTACAAAGATCAAGCGGCCGACTCGGAAGATGATATGTGGAGTGCTGCATTGTGCAGCAGCGAAGCCAAGTCTGAAGATGCAACAGAAGACAACGACTTCTGCTACGTGTCAGAAATCCTGCGCGCCTGCACTTACTTACCAGAAAACGGCGACGCTTTCGCGTTACTAGAGAAGCAGCAGATTCTAAAGGGAAAAGACACTTCAAAGGCCTCAACAATTCAGAGGCGGTTAGTGTTCGACACGGTCCGTGATATCTTGACCCGGCATTGTCGGCTTCCGCCGTGGAAGGTGGCGTTCGGTGGCGATGAGAGGCAGAGAGTATGGTCGGAGTTTCGGAGAGTACGAGGAGAGAGGGAGGAAGAGGAGGAGGAGTGGTCGGAAAAGGACATGTTTGAATTTATATGCGGGGTTTTGAGGAAGGACATGGCGGAGGATGTTGAGGGTTGGGGAGAATGGACGGTGGAGATTGGAGATATGGTATTGGACATCGAACGGCTTGTGTTCAAGGATCTGATTGGCGAGACTATACGAGAGTTGGCCACGTGTGCATCCTCCCAACGTAACAGAGTTTTTGCGCTTCGTAGGAAGCTCGTCTTTTGA 2295 0.5137 MTTSTIVREQNLEKHIHKQMGCMAGFLNIFDRHQILAGKRISCAKRLPAPQPESSPEPESHVASPARPSTPSPERVKKSPAREHTVTTVTTLPVLEFKEGTRSTWKFSREAPRLSLDSRTRTTSPSLSLSPNLTPDNGGEKLSSEIQLQRRSTSVVARLMGLEPLPGPDSDPGPNKKPELRRSASESRASRDLNRFFDAANSNGFQLNLKQVQQRQQYTQPQGIVSEGLNNNAGSDPAKQGARNNNNAKREKNYNSNARNRGVVTMVQKKSFFDSADFFPEVPKRSVSIYGEIERRLRMRGIDEPSKDLETLKHILEALQLKGLLHSKNHANRSNCNNHYNINDIYNQNHMNFVLDGGRMKNDSPIVLIKPVRSNRTGSDSPTSNVRSSPRARRNERQPEFDRRSRNAKSPPVCRSPNRRNVVANAAENHHQSRVNVYDGFDSRKVSPVQSPRVNSRRNTPVHSPRMKKPFDQKEEKVLTVAEDESSTVSESSFSTSSHTDTERYRLEEYKEGRNLLDRCDKLLNSIAEMTASNELQPSPVSVLDSSFYRDDWCSPSPITKRCIDYKDQAADSEDDMWSAALCSSEAKSEDATEDNDFCYVSEILRACTYLPENGDAFALLEKQQILKGKDTSKASTIQRRLVFDTVRDILTRHCRLPPWKVAFGGDERQRVWSEFRRVRGEREEEEEEWSEKDMFEFICGVLRKDMAEDVEGWGEWTVEIGDMVLDIERLVFKDLIGETIRELATCASSQRNRVFALRRKLVF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 174 190 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 113 149 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 370 503 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 465 482 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 374 389 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 483 500 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 46 86 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 161 190 - -
Stsc152348g00001 764 Pfam Domain of unknown function (DUF4378) 597 739 IPR025486 -
Stsc152348g00001 764 PANTHER LONGIFOLIA PROTEIN 4 64 IPR033334 GO:0051513
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 390 409 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 225 260 - -
Stsc152348g00001 764 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152348g00001 Stsc-Chr152348 6837 9885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152348g00001 431 764 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 42.120 3.89e-71 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152348g00001 - - gmx:100777397 687.952