Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152347g00001 ATGGCCCCCAAAGCTGGAAGCTCCGACACTAAGGGGTCTCTCGTGATCATGGTGGTTACAATATTGCTAACAACATCCAATGTTGTTCTTTGTGATGATAATGCGCCAATTCCAGCTGACAAGGGTCAACTGGATGGATGGTTCAACCAAAACGTTGGTCCATTGGATCAGAGGAAGAGCAGTCTTGATCCTTCGCTTGTGGCGGCCGAGGAAGGTTCTAAAGTCGTCAAGGTAATGCAAGACGGTAGCGGCGATTTCAAGAGCATCACGGATGCCGTCAATAGCATCCCTTCCGGGAACGCCAAGCGTGTGATCATATACATAGGTGCTGGGAAATACAATGAAAAGATCAAGATTGAAAGGACCAAGAATTTTGTCACCTTTTATGGTGCACCAGGAGGGGACATTCCAACCTTGGTCTATGGTGGCACTGCACAACAATATGGCACTGTTGACAGTGCTACGTTGATTGTTGAATCCGATTATTTCGTCGCCGCTAACATCCAAATCTCGAACTCTGCACCAAGACCTGATGGACAGAGACCTGGAGCACAAGCAGTAGCATTGAGAATTTCCGGAGACAAGGCATCGTTTTATAATTGCAAGTTTACGGGATTCCAAGACACAATCTGTGATGATAGACACAGACATTTCTTCAAGGACTGCATGATTCAAGGCACCGTTGATTTCATTTTTGGAAGTGGGAGGTCACTCTATTTGAACACAGAGTTGAATGTTCTTGGCGACAGTGGAATGACAGTGATAGTGGCACAAGCAAGAACAATGGACTCACAAGACACTTCCTACTCATTTGTGCATTGCGACGTAACCGGAACAGGGACTGGCTCTTACTTGGGTAGAGCATGGATGTCCAATCCCCAAGTCGTTTTTGCTTACACCACCATGTCCAGTGTTATCAATCCTGTAGGTTGGAGCGACAACATGAACTCTAAATTTGATAGTACTGTATTTTTCGGAGAGTACAAAAACACCGGAGCGGGAGCGGCTATTGCTGGGCGCGCCAAGTTCACAAAGCAACTAAATGATGCAGATGTAAAACCTTTCCTCAATCTTGGTTTCATTGAAGGCTCCTCATGGATACTTCCTCCTCCAAAAGTCTAA 1122 0.459 MAPKAGSSDTKGSLVIMVVTILLTTSNVVLCDDNAPIPADKGQLDGWFNQNVGPLDQRKSSLDPSLVAAEEGSKVVKVMQDGSGDFKSITDAVNSIPSGNAKRVIIYIGAGKYNEKIKIERTKNFVTFYGAPGGDIPTLVYGGTAQQYGTVDSATLIVESDYFVAANIQISNSAPRPDGQRPGAQAVALRISGDKASFYNCKFTGFQDTICDDRHRHFFKDCMIQGTVDFIFGSGRSLYLNTELNVLGDSGMTVIVAQARTMDSQDTSYSFVHCDVTGTGTGSYLGRAWMSNPQVVFAYTTMSSVINPVGWSDNMNSKFDSTVFFGEYKNTGAGAAIAGRAKFTKQLNDADVKPFLNLGFIEGSSWILPPPKV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152347g00001 373 Gene3D - 70 369 IPR012334 -
Stsc152347g00001 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 68 367 - -
Stsc152347g00001 373 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Stsc152347g00001 373 Pfam Pectinesterase 76 363 IPR000070 GO:0030599|GO:0042545
Stsc152347g00001 373 FunFam Pectinesterase 71 369 - -
Stsc152347g00001 373 SUPERFAMILY Pectin lyase-like 74 367 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152347g00001 Stsc-Chr152347 10795 13778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152347g00001 16 373 Carbohydrate Esterase AT1G69940 54.749 9.18e-146 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152347g00001 K01051 - gmx:100786427 531.946