Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152337g00001 ATGGAGCAGTATGAAATACTTGAGCAAATTGGCAAAGGTGCTTTTGGTTCTGCGCTTCTGGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTCAAGAAGATTCGCCTTGCGCGCCAAACAGAGCGAACTCGTAGATCTGCACACCAGGAGATGGAGCTTATTTCTAAATTTCGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATCATAGGTTACTGTGAGGGTGGGGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTCTGTTCCCAGAGGAGAAACTCTGTAAGTGGCTTGTGCAACTTCTTATGGCACTTGACTATTTGCACATGAACCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACGAAAGATCAAGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCCGTTGTTGGAACTCCTAGCTACATGTGCCCTGAGCTCCTAGCTGATATACCGTATGGTTCTAAATCAGATATTTGGTCACTGGGATGTTGTATATATGAAATGACATCACTCAAGGCTGCATTCAAAGCATTTGACATACAAGCATTGATTAACAAGATTAATAGGTCCATAGTGGCGCCATTACCAACAAAATATTCTGGTTCATTTCGAAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTGCAGAGCTGCTTGGGCACCCACATCTTCAATCATATGTTCTTAAGATTCATCTCAAAATCAATAGCCCCAGGAGAAATTCATTACCAGTCCATTGGCCAGAGTACAACTACATGAAGAAAACCAGATTCTTGGAGCCGAAAGATGGCCATGTTTGTATGTACAGGGATAAGAGGCATTCTTTCAACAATGATCGGACTCTAAACCCTAGTGTTTCTGGAGCTGATCAAGATTCTGTCTGTTCCACCCTAGAAATAGATTGTACTCCGGATCATTTAAATCAGAGGTTAGCAGAGTTGAGTGTCAGAGATAGCCCTGGAGTGAAATCAATCCATAAGCCTGCTCTCACCAGAACTTCTAGTATGGCTAAGACTCCCAAGATCAGTCATACAAAAGTTTCTGCTACCAACAAGAAATCAATGGAACCCACAAAGGATCGTAAGGCGGGAAGGCAATCTATTCCTGCTTCAAACAATTCCACAAAAACTACCCAAACAAATCGCAGAGCATCGTTTCCATTGCCATCAAAGGGTACTCAGCAGCCTCCTCACAGGCCTACTATTGGTTTGCTTAGTGGTGTATCTTCACCAGATATTTCAGTCAACTCACCGCGAATTGATAAGATAGCTGAATTCCCATTAGCATCATATGAAGATCCACTGTTCCGATTCAACAGATCATCAACTGTGATTGACAAATGCACAATAGACGTATATGACAAAGTCTCTACTAGGGCCAGTCATGCTGATACTTGGCAAGGAATCAAGCGCAGTGTGTTGAAGGAAAACGACGAGGACAAAAAAAGTGGTTCATCTGATCAAAATGCAACAGCAGGTGCATCGAGCCACACCTCTTCGGACCTGCGCCGCCGACAGTTTGACACTTCGTCATACCAACAGAGGGCCGAAGCCTTGGAAGGGCTGCTCGAATTCAGTGCAAGATTACTGCAGCAGGCAAGGTACGATGAACTCGGGGTTTTGTTGAAACCGTTCGGGCCTGAGAAGGTTTCCCCAAGGGAAACTGCAATCTGGTTGAGTAAGAGCTTCAAAGAGAACACATTCAACCCTGAAGAATCCCCGTAA 1827 0.4346 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERTRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKAAFKAFDIQALINKINRSIVAPLPTKYSGSFRSLVKSMLRKNPELRPSAAELLGHPHLQSYVLKIHLKINSPRRNSLPVHWPEYNYMKKTRFLEPKDGHVCMYRDKRHSFNNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELSVRDSPGVKSIHKPALTRTSSMAKTPKISHTKVSATNKKSMEPTKDRKAGRQSIPASNNSTKTTQTNRRASFPLPSKGTQQPPHRPTIGLLSGVSSPDISVNSPRIDKIAEFPLASYEDPLFRFNRSSTVIDKCTIDVYDKVSTRASHADTWQGIKRSVLKENDEDKKSGSSDQNATAGASSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKENTFNPEESP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152337g00001 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 558 - -
Stsc152337g00001 608 MobiDBLite consensus disorder prediction 520 534 - -
Stsc152337g00001 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc152337g00001 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Stsc152337g00001 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152337g00001 608 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc152337g00001 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152337g00001 608 FunFam Serine/threonine-protein kinase Nek2 84 274 - -
Stsc152337g00001 608 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Stsc152337g00001 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc152337g00001 608 CDD STKc_Nek 3 258 - -
Stsc152337g00001 608 MobiDBLite consensus disorder prediction 508 543 - -
Stsc152337g00001 608 MobiDBLite consensus disorder prediction 352 444 - -
Stsc152337g00001 608 SUPERFAMILY Protein kinase-like (PK-like) 1 296 IPR011009 -
Stsc152337g00001 608 MobiDBLite consensus disorder prediction 399 434 - -
Stsc152337g00001 608 MobiDBLite consensus disorder prediction 362 386 - -
Stsc152337g00001 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152337g00001 Stsc-Chr152337 2038 8214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152337g00001 10 260 MAP Kinase Kinase Kinase AT1G53570 30.859 1.95e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc152337g00001 Pkinase 3.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152337g00001 K08857 - gmx:100804898 1005.74