Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152335g00001 ATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGAAAACTCTCGGATGATCAAACAGCAAGAATTCTCAAGATGGGGTGCCAAAGACCAGGTGAAAGGAAAACCATCATTGAAGGAGTCATGAGAGGGCAAGTTGGACCAACCAGTGGAGACCAGGAAAGAGAATTCAAACTCAATGTCTCAAGAGAAATGACAAGATTAACAGGTAGAATTCTCCACCCTCCAAAGCTAAAGCTTGGAGAGGGAGGTCATGTGAGGAACCTCACTCCTTCGCGCCACGACCGGCAGTGGAACCTGCTCGATGGCCATGTTTTCGAAGGGACTAAAATCGAAAGGTGGGCGCTCATGAGTTTCGGCGGTACCCCTGAGCAGAAGTCCAATATCCCCAGATTCATAAACCAGTTAACTCAAAGATGTGAGCAGCTGGGAATCTATCTCAACAAGAACACTGTCATTAGCCCCCAATTCGAATCGAGCCAGGTCCTAAACAGTGTCTCTCTTCTTGAATCAAAGCTCAAGAAAATACAGAGGAGTGCCTCAAACAACCTCCAGCTTCTGATCTGCATAATGGAGAGAAAACACAAAGGCTATGCAGACTTGAAGAGAATAGCCGAGACGAGTGTCGGGGTTGTAAGCCAATGCTGCCTGTATCCCAATCTAAGCAAGTTAAGTTCACAGTTCTTGGCAAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACGGTTGCTCTCTACAACTCCCTTCCTTGTCAGATACCTCGCCTCTTCGGGATCGATGAGCCGGCTATCTTCATGGGAGCTGATGTGACACATCCTCACCCTCTTGATGATTCTAGTCCATCAGTGGCAGCTGTTGTTGGCAGCATGAATTGGCCAACAGCAAACAAGTACATCTCAAGAATAAGGTCTCAAACACACAGGCAAGAAATCATCCAGGATCTCGGCTCCATGGTCGGGGAGCTGCTCGAAGACTTCTACCAGGAAGTAGAGAAGCTCCCCGGCCGGATAATCTTCTTTCGCGACGGTGTCAGCGAGACTCAGTTCTACAAAGTGCTCCAAGAGGAACTCCAGTCCATCAGAACAGCATGTTCCAAGTTCCCTGACTACAAACCTCTCATCACTTTTGCTGTGGTCCAGAAGAGGCACCACACAAGGCTGTTTCCCTTCGAAACCGACCAGTCCTCGACTCAGAACAATTTCTTATACGAAAACATCCCTCCGGGGACGGTGGTGGATTCGGTGATCACTCACCCAAAGGAATTCGACTTCTACCTATGCAGCCATTGGGGTGTTAAAGGAACAAGCAGGCCAACACATTACCATGTTTTGTGGGATGAAAACCAATTCAGTTCAGATGAACTTCAGAAGCTAGTTTACAATCTGTGCTACACTTTTGTTAGGTGCACCAAACCAATTTCTTTGGTCCCTCCTGCATATTATGCACATTTAGCTGCATACAGAGGAAGACTCTACCTTGAAAGATCTTCAGAATCATTAGGTTTGTTTAAAGGTTCATCAACATTATCAAGAGCTGCTCCTCCAAAAACAGCACCTTTACCTAAACTTAGTGAAAATATCAAGAAGCTAATGTTCTATTGCTAG 1614 0.4641 MELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGQVGPTSGDQEREFKLNVSREMTRLTGRILHPPKLKLGEGGHVRNLTPSRHDRQWNLLDGHVFEGTKIERWALMSFGGTPEQKSNIPRFINQLTQRCEQLGIYLNKNTVISPQFESSQVLNSVSLLESKLKKIQRSASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPCQIPRLFGIDEPAIFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGSMVGELLEDFYQEVEKLPGRIIFFRDGVSETQFYKVLQEELQSIRTACSKFPDYKPLITFAVVQKRHHTRLFPFETDQSSTQNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFSSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSSESLGLFKGSSTLSRAAPPKTAPLPKLSENIKKLMFYC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152335g00001 537 SMART Piwi_a_2 187 497 IPR003165 GO:0003676
Stsc152335g00001 537 FunFam Argonaute 10 73 249 - -
Stsc152335g00001 537 SUPERFAMILY Ribonuclease H-like 172 497 IPR012337 -
Stsc152335g00001 537 Gene3D - 260 537 IPR036397 GO:0003676
Stsc152335g00001 537 ProSiteProfiles Piwi domain profile. 187 497 IPR003165 GO:0003676
Stsc152335g00001 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 498 - -
Stsc152335g00001 537 FunFam protein argonaute 10-like 256 537 - -
Stsc152335g00001 537 Pfam Piwi domain 188 494 IPR003165 GO:0003676
Stsc152335g00001 537 CDD Piwi_ago-like 56 496 IPR045246 -
Stsc152335g00001 537 SUPERFAMILY PAZ domain 1 44 IPR036085 GO:0005515
Stsc152335g00001 537 Gene3D - 73 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152335g00001 Stsc-Chr152335 4537 6553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152335g00001 1 537 Eukaryotic Initiation Factors Gene Family AT5G43810 43.850 4.40e-149 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152335g00001 K11593 - gmx:100796107 1018.84