Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152323g00002 ATGCCATTTCCTTTCTGTTCCCTCTCTTCTTACTTTCTCTCTCAAATGCATAACATGGTTTTGGTTTCATCATCATCATCTCCTTCTGTTGTGTTTAGGGTGAAAAGGTATCAACCAGAACTAGTGGCTCCCGCCACGCCCACTCCCCAAGAAGTTAAACTGCTATCAGACATAGATGATCAAGAAGTGCTACGTTTCCATATTCATAACATATACATATATCGTCACAATCCGTCAATGGAAGGAAAAGACCCTGTAAAGGTGATAAGAGATGCACTCTCAAGAACACTTGTCTTTTACTATCCATTTGCCGGTAGGCTTGGGGAGGGTCATGGCGGCAAGTTGATGGTTGATTGCACTGCAGAGGGGGTCTTGTTCATTGAAGCCGATGCTGATGTGCCACTCGATCATCTTGGTGAAGCTCTTCAACCTCCTTTCCCTTGCTCTAAAGAATTGATCTACAATGTTCCTGGCTCAGATGGAATTTTAGGCTGTCCCCTCTTACTCTTACAGGTGACACGCTTTAAGTGCGGTGGTTTTACTGTTGGCATACGCGTGAACCACGCGATGGTAGATGCAACTGGTATTGTGCAATTCATGAACGCCATAGCTGAAATCTCTCGAGGCTCTCATCAACCTTCCATTCTACCCGTATGGTGTAGGGAGCTTCTAAGCGCAAGAAACCCACCGCGAATCACATGCAACCATCGAGAATTTGAGCAAGTGGAAGATATTAAGCAATGGGAGACAATTATCAGTTGCAACGGAAACATGATTACACGCTCTTTCTTCTTTGGACCCACTGAAATAGCTTCTCTTCGTTGCTTAATTCTAAATAATAATCATCAATTGGGTGAAGAATATACAAGATTTGAGCTTATCACTGCATGCCTATGGTATTGTCTTGCAAAAGCATTGCAACTATCACCAGAAAAACAAGTTCGCATGTATTGTGTGGTCAATGGACGTGAGAGATTTAACCCTCCAATGCCAATTGGTTATTATGGAAATGTTATATCATCTCCGGCGGCAGTGATTACTGTAAAGAAGCTCTGTGAAGATCCATTTGAATATGTTGTAAAGTTAATAAAGAAAGCAAAAGCAGAGACAACAGAAGAATATATGCGTTCTTTAGCAGATTTAATGGTGATTAAGGGGCGACCTTTAACTACGAGAGCATGGTCTTTCCTTGTGTCAAAGGTGACACGTATTGGCTTCAGAAAAGTGGATTTTGGGTGGGGCAATGCAGCGTATGGTGGGCTAGTTGGGGGGAATGTTTTTGGAGAACTTTCTCTGATGGATTATGAGAATGCAAATGGAGAAGAAGGTGTTTTAGTTCCACTTTACTTGCCTGCCAATGCTATGGAGAGGTTTGCAAAAGAATTCGATGATTTCCTTCGGAACACAAATCAATCTACAAAGAGTGGCCAAAACAAAACGTAA 1443 0.4227 MPFPFCSLSSYFLSQMHNMVLVSSSSSPSVVFRVKRYQPELVAPATPTPQEVKLLSDIDDQEVLRFHIHNIYIYRHNPSMEGKDPVKVIRDALSRTLVFYYPFAGRLGEGHGGKLMVDCTAEGVLFIEADADVPLDHLGEALQPPFPCSKELIYNVPGSDGILGCPLLLLQVTRFKCGGFTVGIRVNHAMVDATGIVQFMNAIAEISRGSHQPSILPVWCRELLSARNPPRITCNHREFEQVEDIKQWETIISCNGNMITRSFFFGPTEIASLRCLILNNNHQLGEEYTRFELITACLWYCLAKALQLSPEKQVRMYCVVNGRERFNPPMPIGYYGNVISSPAAVITVKKLCEDPFEYVVKLIKKAKAETTEEYMRSLADLMVIKGRPLTTRAWSFLVSKVTRIGFRKVDFGWGNAAYGGLVGGNVFGELSLMDYENANGEEGVLVPLYLPANAMERFAKEFDDFLRNTNQSTKSGQNKT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152323g00002 480 Pfam Transferase family 34 463 - -
Stsc152323g00002 480 Gene3D - 255 468 IPR023213 -
Stsc152323g00002 480 Gene3D - 32 241 IPR023213 -
Stsc152323g00002 480 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 40 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152323g00002 Stsc-Chr152323 3931 13532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152323g00002 41 460 Monolignol Biosynthesis Gene Families AT5G48930 29.138 2.96e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152323g00002 K19861 - gmx:100787907 525.783