Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152320g00002 ATGTCTTCTCATCAGCATCAACGGCGGAACAATACTATGTTGCCTTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAACAAGTTTTCAAGGAGACATGGAAGTGCTCTCTCAAATCCAGTGTTTCTAAAGCCACCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTAATGAAGTTTGGTTTGTAAAAGGGTGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTCTGTTTAAATATGAAGGAACTTCTCAGTTTGATGTAATCATACTTGAGATGAATGATCTAGAAATAGATTATTCCAAATATGAGACTGTTAATAGAAAGGGCAAACATGATCAGAGAGATGAGAAACCAGCAGTTGGAAAAGGATTGACGTTGTTTTCTCCTCAGCTTCATAAGGGAGTGAGAGGAGAGAGCTCCACTGGAAGGAGAAGAAGAACATCATCTTTGAATTGGCCAAAGCAACTTAAAGCTCAGGAAGTAGCTAAGAAATTCATCTCATGTAACCCTTTCTTCACGCTGTTCATAACGCCTAATTGCCTCAAAGAATACCAACTGAGTGTACCGACTATGAAAGATTATATTGAAGACAAGAGGAAGGATGTGATGCTTAAGATTGGGAAGAGAGAATGGCAAGTAAAGTTGCTCCCTTGCCACAACGCATCGCGCTGCTGCTCGGGTGGTTGGTCTTTGTTTGCCCATGAGAACGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTTAGTTTTTAAGGTTCATATTTTCAAATAG 837 0.3871 MSSHQHQRRNNTMLPFRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSNEVWFVKGWKEFTKNYSLNEGHLVLFKYEGTSQFDVIILEMNDLEIDYSKYETVNRKGKHDQRDEKPAVGKGLTLFSPQLHKGVRGESSTGRRRRTSSLNWPKQLKAQEVAKKFISCNPFFTLFITPNCLKEYQLSVPTMKDYIEDKRKDVMLKIGKREWQVKLLPCHNASRCCSGGWSLFAHENGLQAEDVCVFELINMEDLVFKVHIFK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152320g00002 278 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Stsc152320g00002 278 SUPERFAMILY DNA-binding pseudobarrel domain 17 116 IPR015300 -
Stsc152320g00002 278 Gene3D - 169 278 IPR015300 -
Stsc152320g00002 278 Gene3D - 13 110 IPR015300 -
Stsc152320g00002 278 CDD B3_DNA 16 106 IPR003340 GO:0003677
Stsc152320g00002 278 CDD B3_DNA 186 278 IPR003340 GO:0003677
Stsc152320g00002 278 ProSiteProfiles B3 DNA-binding domain profile. 187 278 IPR003340 GO:0003677
Stsc152320g00002 278 SMART B3_2 18 109 IPR003340 GO:0003677
Stsc152320g00002 278 SMART B3_2 187 278 IPR003340 GO:0003677
Stsc152320g00002 278 PANTHER B3 DOMAIN-CONTAINING 15 274 - -
Stsc152320g00002 278 SUPERFAMILY DNA-binding pseudobarrel domain 184 278 IPR015300 -
Stsc152320g00002 278 Pfam B3 DNA binding domain 187 277 IPR003340 GO:0003677
Stsc152320g00002 278 Pfam B3 DNA binding domain 25 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152320g00002 Stsc-Chr152320 6573 8686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152320g00002 154 278 B3 DNA Binding Superfamily AT3G18990 31.008 6.72e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152320g00002 B3 8.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152320g00002 - - lang:109346569 277.33