Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152320g00001 ATGTCTTCTCATCAGCATCAACGGCGGAACAATACTATGTTGCCTTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTAAAATACCCAACAAGTTTTCAAGGAGACATGGAAGTGCTCTCTCAAATCCAGTGTTTCTAAAGCCACCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTAATGAAGTTTGGTTTGTAAAAGGGTGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTCTGTTTAAATATGAAGGAACTTCTCAGTTTGATGTAATCATACTTGAGATGAATGATCTAGAAATAGATTATTCCAAATATGAGACTGTTAATAGAAAGGGCAAACATGATCAGAGAGATGAGAAACCAGCAGTTGGAAAAGGATTGACGTTGTTTTCTCCTCAGCTTCATAAGGGAGTGAGAGGAGAGAGCTCCACTGGAAGGAGAAGAAGAACATCATCTTTGAATTGGCCAAAGCAACTTAAAGCTCAGGAAGTAGCTAAGAAATTCATCTCATGTAACCCTTTCTTCACGCTGTTCATAACGCCTAATTGCCTCAAAGAATACCAACTGAGTGTACCGACTATGAAAGATTATATTGAAGACAAGAGGAAGGATGTGATGCTTAAGATTGGGAAGAGAGAATGGCAAGTAAAGTTGCTCCCTTGCCACAACGCATCGCGCTGCTGCTCGGGTGGTTGGTCTTTGTTTGCCCATGAGAACGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTTAGTTTTTAAGGCAATTGAGTGA 831 0.3911 MSSHQHQRRNNTMLPFRFFKAILKTNLQRIKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSNEVWFVKGWKEFTKNYSLNEGHLVLFKYEGTSQFDVIILEMNDLEIDYSKYETVNRKGKHDQRDEKPAVGKGLTLFSPQLHKGVRGESSTGRRRRTSSLNWPKQLKAQEVAKKFISCNPFFTLFITPNCLKEYQLSVPTMKDYIEDKRKDVMLKIGKREWQVKLLPCHNASRCCSGGWSLFAHENGLQAEDVCVFELINMEDLVFKAIE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152320g00001 276 ProSiteProfiles B3 DNA-binding domain profile. 187 276 IPR003340 GO:0003677
Stsc152320g00001 276 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Stsc152320g00001 276 PANTHER B3 DOMAIN-CONTAINING 15 268 - -
Stsc152320g00001 276 CDD B3_DNA 16 106 IPR003340 GO:0003677
Stsc152320g00001 276 Pfam B3 DNA binding domain 25 102 IPR003340 GO:0003677
Stsc152320g00001 276 Pfam B3 DNA binding domain 187 273 IPR003340 GO:0003677
Stsc152320g00001 276 CDD B3_DNA 186 273 IPR003340 GO:0003677
Stsc152320g00001 276 SMART B3_2 18 109 IPR003340 GO:0003677
Stsc152320g00001 276 SMART B3_2 187 275 IPR003340 GO:0003677
Stsc152320g00001 276 Gene3D - 169 275 IPR015300 -
Stsc152320g00001 276 SUPERFAMILY DNA-binding pseudobarrel domain 17 116 IPR015300 -
Stsc152320g00001 276 Gene3D - 13 110 IPR015300 -
Stsc152320g00001 276 SUPERFAMILY DNA-binding pseudobarrel domain 184 266 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152320g00001 Stsc-Chr152320 6573 9366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152320g00001 154 274 B3 DNA Binding Superfamily AT3G18990 30.400 1.47e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152320g00001 B3 8.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152320g00001 - - lang:109346569 267.314