Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152318g00001 ATGGATCCAATTACATCATCATCATCACAAGGGCATTCTCTTGCCCCTCCTTTCCACAGAAGAGATCTCAACCTCCACCAATTTTCCAAAACGGAGACAGATACAGAAGCACCCGAAGAACACGAAATTTCAAGAAGGCCACGCGGCAGACCCGCCGGATCCAAGAACAAGCCCAAACCGCCCATCATCATCACGCGCGACAGCGCCAACGCGCTCCGCACGCACGTCATGGAAGTCGCAGATGGCTGCGACATCGTCGAGAGCATCTCCGACTTCGCGCGGAGGCGCCAGAGGGGCGTCTGCATCATGAGTGGCACCGGCACGGTGGTCAACGTCACGCTCCGCCAACCGGCTTCAAGCAACGCGGTGGTGACGCTCCAAGGGAGGTTCGAGATCTTGTCGCTGGCGGGATCGTTCCTGCCGGCGCCGGCTCCACCGGAAGCGTCACGGCTGACGATATACTTGGCTGGAGGACAAGGGCAGGTGGTTGGTGGGACCGTTGTTGGGACGCTGGTGGCTTCGGGGATTGTAGTGATGATGGCTGCTTCTTTCGGTAACGCTGCTTACGAGAAGCTTCCGTTGGAGGAAGATGATGAGAACAATGGTGATGGTGCCACGTTGGCACTTCAACAAGGAGTGGCTTCTACCATGGATTCCCCTGGGGCTAGTAGTAGTGTTCAGCAGCATCAGCAACAGCAACATTATTCACAGACACAGCTTTTGAGGGATGTAACTGCGACTGATCATCAAGTTTTCCGTCATGGTAACCTTGTGGGTTCTTCTACTGTTCGTCATCAGATGCCTTCTTCTGATCAATCTTTTTGGGCGTCTGGTCGCCCTCCATTCTGA 849 0.5512 MDPITSSSSQGHSLAPPFHRRDLNLHQFSKTETDTEAPEEHEISRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEVADGCDIVESISDFARRRQRGVCIMSGTGTVVNVTLRQPASSNAVVTLQGRFEILSLAGSFLPAPAPPEASRLTIYLAGGQGQVVGGTVVGTLVASGIVVMMAASFGNAAYEKLPLEEDDENNGDGATLALQQGVASTMDSPGASSSVQQHQQQQHYSQTQLLRDVTATDHQVFRHGNLVGSSTVRHQMPSSDQSFWASGRPPF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152318g00001 282 MobiDBLite consensus disorder prediction 213 236 - -
Stsc152318g00001 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 198 - -
Stsc152318g00001 282 MobiDBLite consensus disorder prediction 258 282 - -
Stsc152318g00001 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 256 IPR014476 GO:0003680
Stsc152318g00001 282 PIRSF ESCAROLA 4 282 IPR014476 GO:0003680
Stsc152318g00001 282 MobiDBLite consensus disorder prediction 23 49 - -
Stsc152318g00001 282 MobiDBLite consensus disorder prediction 1 63 - -
Stsc152318g00001 282 Gene3D - 72 200 - -
Stsc152318g00001 282 CDD DUF296 73 146 IPR005175 -
Stsc152318g00001 282 ProSiteProfiles PPC domain profile profile. 69 205 IPR005175 -
Stsc152318g00001 282 FunFam AT-hook motif nuclear-localized protein 72 199 - -
Stsc152318g00001 282 MobiDBLite consensus disorder prediction 258 276 - -
Stsc152318g00001 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 185 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152318g00001 Stsc-Chr152318 7143 8212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152318g00001 21 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.717 8.30e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152318g00001 - - gmx:100781436 290.812