Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152301g00002 ATGGCTCTGAAGAATGCTGTGATTCTTCTGAGCCTTCTTTTCCTTTCACACATTTTTCTTCTCATACAAACATGTTATTCCCAAACCAATTTTGATTCTCAGAACATTGAAACTTTCTACCCAATTGAAACACCACAAGAACCACCATTACCAACAATAAATCCAGAAGAATCACCACCATCTCCATCTCCATCACCATCATCATCATCATCAAGAAATTCATCATCAAACAGCAAGGTAGCAAAGGCTGTAGCTGCAACTGCAGTAGGCACACTAACTGTTTGTGGAATTGTCTTCTTCTTAGGTCTAATGTGCTTCAGAGCAAAGAAGAAACATGACATAACCAACACTGCTACAACAACAACAACAACTTCTGCAACACATAGAGATCATAGGAATGTTGTGGTGCCTCTGCCTCAGACTCAGTCTCAGGTGAGTGTGTATGAGAGAATGGAAGGTAACATCAAAGGGCTAATTGTTGATGAGAATGGCTTGGATGTTGTATATTGGAAAAGTCTTCAAGATGGTGGTAAGAACTCAAAAGAGGTATTGGGTAATAATAGTCACAAGAACAAAGAAGAAAAAGATCATGAAGAATATTATTATCAGAGGAAAAAATCTGAGTCTAATGTTCAGGAAATTCCTTTGCTAAGAGGGTTATCTTCTTCAACTTCTTCACACTTGAATATATTCCCTGTAGAACCGTACACTATTATGAAGATTCCACCACCTGCTCCTCCTCCTCCTATTAATGGTGATCATAAACTAGATTTTGTTAGCAATTCAGAAGCAAAACCACCCTCCATTTCTTCATCCTCAACTCCTACACCACTTTCACCTTCCACTCCAAGAATCCAAGATAGAAAAAGTTCAGCTCCTGCGCAGCCGCAGCCTCCGCCTCCTCCTCCTCCACCAATTTCAAAGAGCCAAGCAGTGCCACCCCGACCTCCTGCACCAGTTCCAGAAAGAAAGAGCCAAGCACCTCCACCACCACCACCTCCTCCTCCTCCACCAATTACGGTTAGAAAGAGTCAAGCCCCACCACCACCGCCTCCACCAATTCCCTCCAGAAAGGGTCTACCACCAAAGGGAGTAAATTTGAAATCATCATCAAAACCACCACCTACCCCTATTGAAGCACCATCAAACTCAAAAAGAGGGAAATCTAAAGATGAAGTTATGCATGAAACAGGCAATGGTCAAGCGAAGCTGAAGCCTCTGCATTGGGATAAAGTCAGCACAAATCTTGATCACTCCATGGTTTGGGACAAAATTGACCGTGGCTCCTTCAGGGTCGATGATGATCTTATAGAAGCTCTCTTTGGCTATGTTGCCGTTAACCGCGACGACCCGAAAGTGAATGATTCAGGGAGTTCAAACAAGGGTTCCTCTACCTCAGCTCCATCAACAATTGCATATACCCTTCTTGACCCAAGAAAATCACAGAACACTGCCATTGTGTTGAAATCTCTTGCAATATCAAGAAAAGAAGTTATTGGTGCACTCCTTGATGGTCATGGCCTCAACACAGACACCATTGAAAAGCTTTCTAGGGTTGCTCCAACAGAAGAAGAGCAATCTCTTATACTCCAATACAGAGGAGACCCTTCAAACCTTCCTGCAGCCGAGTCTTTCCTGTATCACACCCTCAAAGTTGTTCCTTCGGCGTTTAAGCGCTTGAATGCCATGCTGTTCAGGCTGAATTATGATGCCGAGATTGTCGAAATCAAGGAGTTTCTGCAGACACTTGAGTTGGGATGTAAGGAGCTTCGGAACCAAGGAGTGTTCCTGAAGCTTCTTGAAGCAGTTCTTAAGGCTGGAAATCGCTTGAATGCAGGTACTCATAGGGGTAATGCTCATGCTTTCAACTTGACTTCTCTTAGAAAACTCTCTGATGTTAAGAGCACCGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAGGAAGTGGTCCGATCAGAAGGCAAACGTGCTGCTCTCAACCGAAGCTACAGCATGAGCCGAAGTAGCAGCAGAAGTAGAAGTAGCGGCAGTAATAGCAGCGAAAACACAGAGAATTTTGTCTCAGATGAACAAAGAAAAAGGGAATACACAACACTAGGATTGCCAATTGTTGGAGGGGTCAGTTCTGAGTTCTCCAATGTAAAAAAAGCAACACTAACAGATTACAAAAGTTTTGTTGGTTCAATCTCAGCACTGTCAGCAAGGATAGCTGAGATTCGAGAACTTGTTTCGAAGTGTGGACGAACTGATAAAGGAGGGAATTTTGTTAGAGAAATGAACCATTTTCTTGCACATGCTGAGGAAGAAGTGAAACTGGTGAGTGAAGAGCATGGAAGGGTGATGCAGCTTGTGAAGAAAACAACAGCTTATTATCAAGGAGGAGGGACATGGAAAGAGAGTGAACAACCACTTCAACTGTTTGAGATAGTGAAGGATTTTCTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGGGTACAAAGGAGAGAGGACTTCTGTGGTTTTGA 2532 0.4313 MALKNAVILLSLLFLSHIFLLIQTCYSQTNFDSQNIETFYPIETPQEPPLPTINPEESPPSPSPSPSSSSSRNSSSNSKVAKAVAATAVGTLTVCGIVFFLGLMCFRAKKKHDITNTATTTTTTSATHRDHRNVVVPLPQTQSQVSVYERMEGNIKGLIVDENGLDVVYWKSLQDGGKNSKEVLGNNSHKNKEEKDHEEYYYQRKKSESNVQEIPLLRGLSSSTSSHLNIFPVEPYTIMKIPPPAPPPPINGDHKLDFVSNSEAKPPSISSSSTPTPLSPSTPRIQDRKSSAPAQPQPPPPPPPPISKSQAVPPRPPAPVPERKSQAPPPPPPPPPPPITVRKSQAPPPPPPPIPSRKGLPPKGVNLKSSSKPPPTPIEAPSNSKRGKSKDEVMHETGNGQAKLKPLHWDKVSTNLDHSMVWDKIDRGSFRVDDDLIEALFGYVAVNRDDPKVNDSGSSNKGSSTSAPSTIAYTLLDPRKSQNTAIVLKSLAISRKEVIGALLDGHGLNTDTIEKLSRVAPTEEEQSLILQYRGDPSNLPAAESFLYHTLKVVPSAFKRLNAMLFRLNYDAEIVEIKEFLQTLELGCKELRNQGVFLKLLEAVLKAGNRLNAGTHRGNAHAFNLTSLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAALNRSYSMSRSSSRSRSSGSNSSENTENFVSDEQRKREYTTLGLPIVGGVSSEFSNVKKATLTDYKSFVGSISALSARIAEIRELVSKCGRTDKGGNFVREMNHFLAHAEEEVKLVSEEHGRVMQLVKKTTAYYQGGGTWKESEQPLQLFEIVKDFLGMVDQACIEIARNMQKRKGTKERGLLWF 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 263 292 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 242 406 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 662 692 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 180 208 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 452 468 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 384 398 - -
Stsc152301g00002 843 Gene3D Formin, FH2 domain 416 840 IPR042201 -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 185 206 - -
Stsc152301g00002 843 ProSiteProfiles Formin homology-2 (FH2) domain profile. 394 843 IPR015425 -
Stsc152301g00002 843 SMART it6_source 391 833 IPR015425 -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 293 359 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 44 66 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 42 75 - -
Stsc152301g00002 843 PANTHER FORMIN-RELATED 29 829 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 662 686 - -
Stsc152301g00002 843 PRINTS Proline rich extensin signature 231 248 - -
Stsc152301g00002 843 PRINTS Proline rich extensin signature 328 340 - -
Stsc152301g00002 843 PRINTS Proline rich extensin signature 54 66 - -
Stsc152301g00002 843 PRINTS Proline rich extensin signature 296 321 - -
Stsc152301g00002 843 MobiDBLite consensus disorder prediction 448 468 - -
Stsc152301g00002 843 SUPERFAMILY Formin homology 2 domain (FH2 domain) 348 837 - -
Stsc152301g00002 843 Pfam Formin Homology 2 Domain 399 818 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152301g00002 Stsc-Chr152301 5314 8288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152301g00002 11 833 FH2 protein (formin) Gene Family AT1G70140 43.353 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152301g00002 - - gmx:100780368 811.986