Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152295g00003 ATGATATCTTCTCAGATGTTGCGTGAAGAACGCTGTTGGCTTTATGTGGATGAAAAGGGAATGAAACGTGGTCCACATTCTATTACAGAATTGATTTCCTGGCACCATCATGGATATCTTCAGGATTCATCAGTGATATCTCATTTTCGCAATGAGTACGGCTCCTTTGTGCTAGTTGCTGCTGTAAATGCTCTGAAAGGTTATACATCCGGAACCATTTGTAAATCAGGTTCCCATGACAATGAGGTTGGTGGTAATGTAAACTTAATCGGTGAAATCTCTGAGGACATTTCTTCCCAATTGCACATGGGTGTTATGAAAGCTGCCCGCAGAGTTGTGCTTGATGGGGTTATAAGTGATATTATTGCAGACTTTTTTACAGAAAAGAAACACAAGAAGCAGAAGCTTGAATCATCTAACCAGGCTTCTGAGACCTCTGTGGTTGACAGCAAAATGTCCAAGGTTGCTGCGGAGATTAGTATAGATACTACTGTTCCAAGTGAGCATGCGTATTCCCGTATTGCAGATGATCGGGCTTGTCTGAAACTTTCTAGTTCATCTTCAACAAATATTAAATCAGTTGGAAGTGTTGAAAACTTTTGGTGGTCATATTCTGTTGTACGTAAAGTACTTGTTGATTACTGCATGCAAGTCATGTGGAATGCTGTGTTTTTTGACCCTATAGCAGAGTACTTATGTTCTTGGAGGAAGAATAAACTTTGGTCTCATCCTAAGCCTCAAATATTTGTTAATGAATGTGGAGAATATGACAGAAAGATTAAATCTGAAGCTTTGCTTCTTGGGACAGGTTGTTCTAAATACCCTACTGATGGCTGTTATCAGTTTGGCGTGCTGACAACGGGAACAGATTCTCATTCTAAGTTATCTTCTAATGTACCCAAAGATCGAAATTCAATGGAAGGTCAAAGAGTGTCGGGCACTTATAGTAACTCCCAAAATTTGACAGGCATTATTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTGGCTGAATACGTTAGAAGTTTTGTTGAAACGGAAGTGAACAAAATAATTCATTCCCCTCATGAAGACAAATTGAATAAGGTTGCTGTTAGTGTCCGTGGTTTCTCGGAACTACACACTGAGGAAACTCTTACGAAGGAAATTCTAAATGACAAGTTAGTAGCTACTGTTAAGGCTAAAGATTCAGTTTGTGAGCCTTCATTAGCAAATCATATGTCTAATGTATTATCGAATGCATTTGAGGAGTTGTGTGGGGGTGTAGATGTAGTTGATGAAGAGGAAATTGGTGACCTTCCACCTGGATTTGAAGAGAACTTGCACACAATTTTCCCACCACCCAATTTGAAGTTTCGACCTTCAAGAGTAGCTGAATGTAATCCTAAGATTACAGAATATGTTGCAACTGCGCTATGCCGACAGAAGTTGCATAATGAAGGCCTAGAAGAGTGGAAGTCTGCATTTTTTTATTCTACATTGAATCAAGCTATTATGTCTAAAAAGAAACGTAGTCATTCTGGTGTTCATAAGAAAGGAAAAGCAAAGAAAGCAAGGATGGAAAACTTAAATGATGCTACTTACGGACTGGGAAAGATGAAAGGAGATGCAAAAAGCTCTTCTGGAGTTCCTATAGTTAATGGGAAGTATACATACCACCGCAAGAAATTGTCACAAAAAGAGTTGTGTTCCTCTCAATCTGCTTCAGTGGATGATTCTAGGCCAAGGAAGCAGAATGTGTCTAAGTTAAGGAATCGTGTTTTGGGAGATTTGGATGAGGCAGCAGAAGTCAAAATTGCTGCTAAGCGTGGAAAGGCTAGTGTGGTTAAAGGGAAAAACCATAAATCTAATAAGAGCAAGTCTTCTATCCCTGTCAATGATGATGTTGTGGATGTCATAAAATCTAATGAAAAAAGGCTTTCTGTATCAACAAATAATAGTGTTGGCATGAAGAAGGCGGTTAAAAGCAATGTTTCAGATGTCCTAAAATCTAATGAAAAGAGGCATTCAGCATCAACAAATAATAATGTTTCCATGAAGAAGGTGGCTAAAAGCAATGGCAGTGAAGACACCATTAAGGGGAAGACTGCTGGTCATTGTTCCAAACAGAGACCGAATGCAAATAAAATGTCAAAACCAAAAAGGAAACATTCTACAGATGGTTCGCCATCCTCACATCCTGCCAAGGCTTTGAAGCTTTCAAATGATGGTGCAAAGCATGGGCCAAGTAAACAGGCTACTGTTACAAGAAGGAGTTCTGTCAAATCCAAGCCATTGAATTTATGTCCCAGATCCGATGGATGTGCTAGGACTTCCATTGATGGGTGGGAATGGCATAAATGGTCTCGAAGTCCTATTCCTGCACATAGAGCACGTGTCAGGGGAATCTCCTGTGTACAAAACAAGTGCATAGATTCAGATAATATTTTATCGCAGTTATCAAATAATAAGGGTCTTTCTGCAAGAACAAATAGGATGAAATTGCGCAACCTCCTTGCTGCTGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCAAGGAAAAAACGATTACGTTTTCAAAGGAGTAAGATACATGACTGGGGTCTTGTTGCGATGGAGCCAATAGAGGCAGAGGACTTCGTGATTGAATATGTTGGAGAACTAATTCGTGCTCGGATATCTGATATCCGTGAACTTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGACGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATCGCAAGATTTATTAACCATTCTTGTGAG 2811 0.3981 MISSQMLREERCWLYVDEKGMKRGPHSITELISWHHHGYLQDSSVISHFRNEYGSFVLVAAVNALKGYTSGTICKSGSHDNEVGGNVNLIGEISEDISSQLHMGVMKAARRVVLDGVISDIIADFFTEKKHKKQKLESSNQASETSVVDSKMSKVAAEISIDTTVPSEHAYSRIADDRACLKLSSSSSTNIKSVGSVENFWWSYSVVRKVLVDYCMQVMWNAVFFDPIAEYLCSWRKNKLWSHPKPQIFVNECGEYDRKIKSEALLLGTGCSKYPTDGCYQFGVLTTGTDSHSKLSSNVPKDRNSMEGQRVSGTYSNSQNLTGIIESVENELHFSSKVSLAEYVRSFVETEVNKIIHSPHEDKLNKVAVSVRGFSELHTEETLTKEILNDKLVATVKAKDSVCEPSLANHMSNVLSNAFEELCGGVDVVDEEEIGDLPPGFEENLHTIFPPPNLKFRPSRVAECNPKITEYVATALCRQKLHNEGLEEWKSAFFYSTLNQAIMSKKKRSHSGVHKKGKAKKARMENLNDATYGLGKMKGDAKSSSGVPIVNGKYTYHRKKLSQKELCSSQSASVDDSRPRKQNVSKLRNRVLGDLDEAAEVKIAAKRGKASVVKGKNHKSNKSKSSIPVNDDVVDVIKSNEKRLSVSTNNSVGMKKAVKSNVSDVLKSNEKRHSASTNNNVSMKKVAKSNGSEDTIKGKTAGHCSKQRPNANKMSKPKRKHSTDGSPSSHPAKALKLSNDGAKHGPSKQATVTRRSSVKSKPLNLCPRSDGCARTSIDGWEWHKWSRSPIPAHRARVRGISCVQNKCIDSDNILSQLSNNKGLSARTNRMKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVAMEPIEAEDFVIEYVGELIRARISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCE 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152295g00003 937 SUPERFAMILY GYF domain 7 61 IPR035445 -
Stsc152295g00003 937 Gene3D - 2 80 IPR035445 -
Stsc152295g00003 937 MobiDBLite consensus disorder prediction 658 764 - -
Stsc152295g00003 937 ProSiteProfiles GYF domain profile. 10 66 IPR003169 GO:0005515
Stsc152295g00003 937 SUPERFAMILY SET domain 850 937 IPR046341 -
Stsc152295g00003 937 ProSiteProfiles SET domain profile. 855 937 IPR001214 GO:0005515
Stsc152295g00003 937 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 7 937 IPR044570 GO:0042800|GO:0051568
Stsc152295g00003 937 MobiDBLite consensus disorder prediction 293 312 - -
Stsc152295g00003 937 Pfam SET domain 867 937 IPR001214 GO:0005515
Stsc152295g00003 937 MobiDBLite consensus disorder prediction 672 696 - -
Stsc152295g00003 937 MobiDBLite consensus disorder prediction 744 763 - -
Stsc152295g00003 937 Gene3D SET domain 800 937 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152295g00003 Stsc-Chr152295 11807 17625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152295g00003 854 936 C2H2 Transcription Factor Family AT2G23740 36.082 3.51e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc152295g00003 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152295g00003 - - aip:107636228 1534.62