Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152295g00001 ATGGCGCCGAGTAGAAGCAGAGATGTGCAGCTCACTTCGATCGCCGGCGACAGAGACGATGACGCCGACGACTTGGAGGAGGTGCGGCTACTGGACTCTTACGATTCGCGAGAAGACGGAATTGATGCCGGCGGAATGAAGCGGATTCAAGTGAGGGTCACCGGGATGACTTGCGCTGCATGCTCCACCTCCGTTGAATCCGCTCTATGCGCCGTCGACGGCGTAATTACTGCCTCCGTTGCACTGCTTCAGAACAAAGCCGATGTAGCTTTCAACCCAGCTCTGGTCAAGGAAGAAGACATAAAAAATGCAATTGAAGATGCTGGGTTTGAAGCAGAAATATTACCGGAAGCCAGCACAACTGGAAAGCCGCCACATGGAACACTTGTGGGACAATTCACAATTGGTGGTATGACTTGTGCAGCCTGTGTAAATTCTGTGGAAGGTATTTTGAGAGATCTTCCAGGGGTTAAGAGGGCTGTAGTGGCTTTAGCTACTTCGTTAGGGGAAGTTGAATATGATCCGAGTGTAATTGGTAAAGATGATATAGTCAATGCAATCGAAGATGCTGGTTTTGAAGGTTCATTTGTACAGAGCAGTGAACAGGATAAAGTAGTTTTCGAGGTGGTTGGTGTGTACAGTCTGGTTGACACTCAAGTTTTAGAAGGCATGCTTGGCAGTATCAAAGGAGTAAGGCAATTTCGTTTTGATCAGGTATCAGGTCAATTGGATGTTGTCTTTGATCCTGAAGTTCTCAGTCCTAGATACTTAGTCGACGGGATTGAAGGGGGAAGCAATGGAAAATTTAAATTACGTGTTAGGAACCCTTATACAAGGATGGCTTCTAAAGATGTTGAGGAAAGCTCAACTATGTTTCGGCTCTTCATCTCCAGCCTGCTTCTTAGTGTTCCTCTCTTCTTCATGAAGCTAGTATGTCCTCATATACCAATGATATATTCTTTATTACTCCGTAGATGCGGGCCTTTCCTTACGGTTGATTGGTTGAAGTGGGGATTGGTGAGTATCATTCAATTTGTGATTGGGAAGCGATTCTACATTGCCGCGGCCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTTCTAGTTGCTGTAGGAACTACCGCATCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGAGCTCTTACCGGATTTAGGGCTCCGGTATACTTTGAAACAAGTGCCATGCTCATAACATTTGTATTGTTGGGAAAGTATTTGGAATGCCTTGCCAAGGGGAAGACATCAGACGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACAGCTTTACTGATTATCAAAGATAAAGGTGGTAGATCTATTGAAGAAAAGGAAATTGATTCTTTGCTCGTTCAACCTGGTGACTTGCTAAAAGTTGTTCCTGGTACAAAGATTCCTGCTGATGGAATCGTTTCTTGGGGATCAAGTTATGTAAATGAAAGCATGGTAACAGGTGAAGCTGTACCTGTTCAGAAGGAGGTGAATGCATCTGTTATTGGTGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATC 1580 0.4437 MAPSRSRDVQLTSIAGDRDDDADDLEEVRLLDSYDSREDGIDAGGMKRIQVRVTGMTCAACSTSVESALCAVDGVITASVALLQNKADVAFNPALVKEEDIKNAIEDAGFEAEILPEASTTGKPPHGTLVGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVALATSLGEVEYDPSVIGKDDIVNAIEDAGFEGSFVQSSEQDKVVFEVVGVYSLVDTQVLEGMLGSIKGVRQFRFDQVSGQLDVVFDPEVLSPRYLVDGIEGGSNGKFKLRVRNPYTRMASKDVEESSTMFRLFISSLLLSVPLFFMKLVCPHIPMIYSLLLRRCGPFLTVDWLKWGLVSIIQFVIGKRFYIAAARALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFRAPVYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLIIKDKGGRSIEEKEIDSLLVQPGDLLKVVPGTKIPADGIVSWGSSYVNESMVTGEAVPVQKEVNASVIGGTINLHGVLHIQATKVGS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152295g00001 527 SUPERFAMILY Calcium ATPase, transduction domain A 452 526 IPR008250 -
Stsc152295g00001 527 SUPERFAMILY HMA, heavy metal-associated domain 44 116 IPR036163 GO:0046872
Stsc152295g00001 527 CDD HMA 132 193 IPR006121 GO:0046872
Stsc152295g00001 527 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 12 527 - -
Stsc152295g00001 527 SUPERFAMILY HMA, heavy metal-associated domain 127 200 IPR036163 GO:0046872
Stsc152295g00001 527 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Stsc152295g00001 527 MobiDBLite consensus disorder prediction 1 20 - -
Stsc152295g00001 527 CDD HMA 50 113 IPR006121 GO:0046872
Stsc152295g00001 527 FunFam Copper-exporting P-type ATPase A 45 115 - -
Stsc152295g00001 527 NCBIfam copper ion binding protein 132 193 IPR006122 GO:0005507
Stsc152295g00001 527 NCBIfam copper ion binding protein 49 112 IPR006122 GO:0005507
Stsc152295g00001 527 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Stsc152295g00001 527 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Stsc152295g00001 527 Gene3D - 420 527 - -
Stsc152295g00001 527 Gene3D - 131 196 - -
Stsc152295g00001 527 ProSitePatterns Heavy-metal-associated domain. 53 83 IPR017969 GO:0046872
Stsc152295g00001 527 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Stsc152295g00001 527 Pfam Heavy-metal-associated domain 133 193 IPR006121 GO:0046872
Stsc152295g00001 527 Gene3D - 46 117 - -
Stsc152295g00001 527 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Stsc152295g00001 527 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Stsc152295g00001 527 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Stsc152295g00001 527 Pfam E1-E2 ATPase 433 527 - -
Stsc152295g00001 527 FunFam Copper-transporting ATPase 1, putative 420 527 - -
Stsc152295g00001 527 FunFam Copper-exporting P-type ATPase A 128 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152295g00001 Stsc-Chr152295 1 2585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152295g00001 1 527 Primary Pumps ATPases AT5G44790 70.205 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152295g00001 K17686 - gmx:100804960 835.869